Corynebacterium sanguinis: E3227_10310
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Entry
E3227_10310 CDS
T06569
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csan
Corynebacterium sanguinis
Pathway
csan03030
DNA replication
csan03410
Base excision repair
csan03420
Nucleotide excision repair
csan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3227_10310 (ligA)
03410 Base excision repair
E3227_10310 (ligA)
03420 Nucleotide excision repair
E3227_10310 (ligA)
03430 Mismatch repair
E3227_10310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csan03032
]
E3227_10310 (ligA)
03400 DNA repair and recombination proteins [BR:
csan03400
]
E3227_10310 (ligA)
Enzymes [BR:
csan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E3227_10310 (ligA)
DNA replication proteins [BR:
csan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E3227_10310 (ligA)
DNA repair and recombination proteins [BR:
csan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E3227_10310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3227_10310 (ligA)
MMR (mismatch excision repair)
DNA ligase
E3227_10310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3227_10310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QDR78393
LinkDB
All DBs
Position
complement(2135870..2137888)
Genome browser
AA seq
672 aa
AA seq
DB search
MSDISADLHRQWDDLASQVRHHRDLYYNGQPVISDAEFDKLFNNLVAFEEAHPELAVPES
PTKEVGAPVSSAFDDVEHLERMMSLDNVFSAEELADWLAKTPGPYLTELKIDGLSIDLIY
ENGELVRAATRGDGRVGEDITANAKVIPDIPHTLTGDFPELLEVRGEVFIRPEDFPELNE
QRIKEGGKPFANPRNTAAGGLRQKNPEDVKKRKLRMICHGIGAREGFSPASQFEAYEKLA
EWGLPVSEYTRRAETAAHVQESVDYWAEHRHDALHEMDGVVIKVDSVATQRSLGATSRAP
RWAIAYKYPPEEVTTKLLDIEVSVGRTGRATPFAVLEPVFVSGSTVSLATLHNQHEVKRK
GVLIGDTVVIRKAGEIIPEVLGPVADLRDGSEREFIYPKDCPACGTELAPAKEGDADWRC
PNTRSCPAQLSQRLKYLASRGAFDIEALGEKGAIDLIDSGVLVDEGDLFDLTEEDLKKSS
AYTTKAGNVNAAGKKLLANLDTARERELWRVLVALSIRHVGPTAARALAARYASMQALID
APVADLADTDGVGLVIAQSFKDWFTVDWHRDIVDKWAKAGVRMVDDTTDAAPQTLEGLTV
VVTGTLENFSRDEAKEAILSRGGKAAGSVSKKTSYVVVGENAGSKEDKARELGVPILNEE
QFEQLLQTGSAQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacatttccgcagacctgcaccgccagtgggacgaccttgccagccaggtgcgt
caccaccgcgacctgtactacaacggccagccggtgatttccgacgctgaattcgacaag
ctgttcaacaatctcgtcgccttcgaggaggcccacccggagttggccgtgccggagtcg
ccgacgaaggaggtcggcgctcccgtctccagcgcgttcgacgacgtcgagcacctcgag
cggatgatgagcctggataacgtgttctccgccgaagaactcgccgactggctggccaag
acgccggggccgtatctcacggagctgaagatcgacgggttgtcgatcgacttgatttac
gaaaacggcgagctggttcgcgccgccacgcgtggcgacggccgcgtcggcgaggacatc
accgccaacgcgaaagtcatccccgatatcccgcacaccctcactggagacttccccgaa
ctgctagaagtccgcggcgaggtgttcatccgccccgaggacttccccgagctcaacgag
cagcgcatcaaagagggcggaaagcctttcgccaacccgcgcaacaccgccgccgggggc
ctgcgccagaagaacccggaggatgtgaagaagcgcaagctgcgcatgatctgccacggc
atcggcgcgcgcgaggggttttcgcccgcgtcccagttcgaggcctacgaaaagctcgcg
gagtggggacttcccgtttccgagtacacccgccgcgccgagacggccgcgcacgtccaa
gagtccgttgactattgggccgagcaccgccacgatgcgctccacgagatggacggggtc
gtgatcaaggtggactccgtcgccacgcagcgttccctgggtgcgacgtcgcgcgcgccg
cgctgggcgatcgcgtacaagtacccgccggaggaggtgaccacgaaactgctcgacatc
gaggtctccgtcgggcgcaccggccgcgccaccccgttcgcggtgctggagccggtgttc
gtctccggctcaacggtgtcgctggcgaccctgcacaaccagcacgaagtcaagcgcaag
ggcgtgctcatcggggatacggtggtgatccgcaaggccggcgagatcatccccgaggtg
ctgggccccgtcgcggatctgcgcgacggcagcgagcgcgagttcatctacccgaaggac
tgcccggcgtgcggcacggagcttgcgccggccaaggagggcgacgcggactggcgctgc
ccgaacacgcgctcgtgcccggcgcaactgtcgcagcgcttgaagtacctggcgtcgcgc
ggcgcgttcgacatcgaggcgctcggggagaagggtgcgattgacctcatcgactcgggc
gtgctcgtcgacgagggtgacctgttcgacctcaccgaggaagacctcaaaaagtccagc
gcctacaccaccaaggcgggcaacgtcaacgccgcgggcaagaagctgctggccaacctg
gacaccgcgcgcgagcgcgaactgtggcgagtgctggttgcgctctcgatccgccacgtc
gggcccaccgccgcccgcgcgctcgcagcgcgctacgcctcaatgcaggcgcttatcgac
gcccccgtagccgacctcgccgacaccgacggcgtggggttggtcatcgcgcaatccttc
aaggactggtttacggtggactggcaccgcgacatcgtggacaagtgggctaaggccggg
gtgcgcatggtcgacgacaccaccgatgccgccccgcagaccctcgagggacttaccgtc
gtggtgacgggaaccctggagaacttctcccgcgacgaggcgaaggaggcgatcctgtca
cgcggcgggaaggcggccggctcggtgtcgaagaagaccagttacgtcgtggtgggagaa
aacgcaggatcgaaggaggacaaggcgcgcgagcttggcgttcccatcctcaacgaggag
cagtttgagcagctgcttcagaccgggtcggcgcagtag
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