Camelina sativa (false flax): 104707606
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Entry
104707606 CDS
T05044
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104707606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104707606
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104707606
Complex C
U5 SnRNP specific factors
104707606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
Ras
EF-G_D2
WRNPLPNID
Motif
Other DBs
NCBI-GeneID:
104707606
NCBI-ProteinID:
XP_010455746
LinkDB
All DBs
Position
13:complement(20911276..20915974)
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AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESEDEVEKDEDKQPEENGHGSDGEQGGSNGWITTINDVE
MENQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRDIRFEVGVKDQSTY
VSTQFLIGLMSNPALMRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNVKNEKHMKYTDTR
VDEQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDA
AEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISV
ASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRLWGDVY
YHPDTRVFKKNPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNSAY
KLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPREAASRKVGHAYTGPTDSPIYESMVEC
DPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPDDEEDMTIKEVT
KLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCDSTFDEDVHIFRALQFNTLSVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIESGVVSID
WNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNVLLDDTLPTEVDRNLMMAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLM
EPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCVSVFDHWAIVPGDPLDKSILLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
GNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttgtatgatgagtttggtaactacattggacctgagattgagtctgac
agagagagtgaggatgaagtagaaaaagatgaagataagcagcctgaagaaaatgggcat
ggatctgatggcgaacaaggaggttcaaatggctggattaccacaatcaatgatgttgag
atggagaaccagattgttcttccagaggataagaagtattaccctactgcagaggaggtt
tatggtgaggatgttgagaccttggttatggatgaagatgagcagcctcttgagcaaccc
attatcaaacctgttagagatatcagatttgaggttggggtcaaggatcaatcaacgtac
gtgtcaactcagtttcttatcggcctcatgtctaatcccgcccttatgaggaatgttgct
cttgtgggtcatctacagcatgggaaaactgtcttcatggatatgttggtagagcagacg
catcatatgtctacttttaatgttaaaaacgagaagcatatgaaatatacagacacccga
gtcgatgagcaggagagaaatatctcaatcaaggccgttccaatgtcccttgttcttgag
gacagtagatccaaatcatacctgtgcaatatcatggatactcctggacatgtcaatttc
tctgacgaaatgactgcttctttaagacttgccgatggtgctgttctcattgttgatgct
gctgaaggagtcatggtaaacacagagagagctattcggcatgcaatccaggaccgtctc
cctattgttgttgtgatcaataaggtagacaggctcataactgagctcaaactacctcca
agggatgcttactacaagcttaggcatacaattgaagtcattaataaccacatatctgtt
gcttcaacaactgctggaaacttaccccttatagaccctgcagctggaaatgtatgtttt
gccagtgggacagctggatggtctttcacattgcaatcttttgctaaaatgtatgccaag
ctacatggggtggccatggacgtggataagtttgcatctcgactttggggagatgtatat
tatcaccctgatactagggtattcaagaaaaatcctccagtaggtggtggagaaagagca
tttgttcagtttattctggagcctctatacaaaatatacagccaagtgataggtgaacat
aagaagagtgtggagaccacccttgcagaattaggagtgactctgagtaatagtgcatat
aagctaaacgtcagacctttacttaggttagcctgtagctcagtttttggttcggcatca
gggttcactgatatgttggtaaagcacattccttctcccagagaggctgcatcgaggaaa
gtcggccatgcatacactgggccaacagattcccccatttatgagtcaatggtagaatgt
gacccatctggacctctcatggttaatgtgacaaagctgtaccctaaatcagatactagt
gtgtttgatgtgtttggaagagtttatagtggtaggcttcaaacagggcaaagcgtacgt
gtactaggagaagggtattcacctgatgatgaggaggacatgactataaaagaagtgacc
aagctatggatatatcaagcgaggtatagaataccagtgagcagtgcccctcctggttca
tgggttctaattgaaggtgttgatgcgtccatcatgaaaactgcgactctgtgtgattca
accttcgatgaagatgtccacatattccgagcgctccaatttaataccctctcagtagtg
aagactgctactgagcctttgaatcctagtgagctgcctaaaatggtggaagggcttaga
aaaattagcaaaagctatccccttgcgattaccaaagtcgaggagtctggagaacatact
attctaggcacgggtgagttgtacttggactccatcatgaaggacctcagggagctctat
tcagaggtcgaagtaaaggttgcagatccggtggtctccttctgtgagacagttgttgaa
tcttcgtccatgaagtgttttgctgagactccaaacaaaaagaacaaaataacaatgatt
gcagagccattggacagagggcttgctgaggacattgagagtggcgtcgtaagcattgac
tggaacaggaaacaactcggggacttcttcaggacgaagtatgactgggatctacttgct
gcacgttccatttgggcttttggtcctgacaaacaggggccaaatgttttattggatgac
accctcccaactgaggtcgacaggaacttgatgatggcagtgaaagactccattgttcaa
gggttccagtggggtgcccgtgaaggtcccctctgtgatgagcccataagaaatgtaaag
ttcaagattgttgatgcacggatagcaccagagccgctgcatagaggatctggtcagatg
attccaacagcaagacgtgttgcatattcagccttccttatggcaactccaaggctgatg
gaacctgtgtactatgtggagatacaaacaccaatcgattgtgttactgcaatctacaca
gttttgtcacgtagacgtgggcacgtcacatctgatgttcctcagcctggtactcccgct
tacattgtgaaggcttttctacctgtgatagaatcgtttgggtttgagacagacctgagg
taccacacacagggacaagctttctgcgtgtctgtgtttgatcactgggccattgtgcca
ggagaccctcttgacaaaagcatcctactgcgtccacttgagcctgcccctattcagcac
ctagctcgtgaattcatggtcaagacccgccgtagaaagggaatgagtgaagatgttagt
ggcaacaagtttttcgacgaggccatgatggtggagttggcccagcagactggtgatctt
catcttcagatgatgtga
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