Camelina sativa (false flax): 104716826
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Entry
104716826 CDS
T05044
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104716826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104716826
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104716826
Complex C
U5 SnRNP specific factors
104716826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
SOI
WRNPLPNID
Motif
Other DBs
NCBI-GeneID:
104716826
NCBI-ProteinID:
XP_010432578
UniProt:
A0ABM0TWR1
LinkDB
All DBs
Position
2:3542178..3546923
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AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDDGVEEDEDKQPEENGHGSDGEQGGSNGWITTINDVE
MENQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRDIRFEVGVKDQSTY
VSTQFLIGLMSNPALMRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNVKNEKHMKYTDTR
VDEQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDA
AEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISV
ASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKMYAKLHGVAMDVEKFASRLWGDVY
YHPDTRVFKKNPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNSAY
KLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPREAAARKVGHAYTGPTDSPIYESMVEC
DPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPDDEEDMTRKEVT
KLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCDSIYDEDVHIFRALQFNTLSVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIESGIVSID
WNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLM
EPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCVSVFDHWAIVPGDPLDKSIQLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
GNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttgtatgatgagtttggtaactacattggacctgagattgagtctgac
agagagagtgacgatggagtagaagaagatgaagataagcagcctgaagaaaatggtcat
ggatctgatggtgaacaaggaggttcaaatggctggattaccacaatcaatgatgttgag
atggagaaccagattgttcttcctgaggataagaagtattaccctactgcagaggaggtt
tatggtgaggatgttgagaccttggttatggatgaagatgaacagcctcttgagcaaccc
attatcaaacctgttagagatatcagatttgaggtcggagtcaaggatcagtcaacgtac
gtgtcaactcagtttcttatcggcctcatgtctaatcccgcccttatgaggaatgttgct
cttgtgggtcatctacagcatgggaaaactgtcttcatggatatgttggtagagcagacg
catcatatgtctacttttaatgttaaaaacgagaagcatatgaaatatacagacacgcga
gtcgatgagcaggagagaaatatctcaatcaaggccgttccaatgtcccttgttcttgag
gacagtagatccaaatcatacctgtgcaatatcatggatactcctggacatgtcaatttc
tctgacgaaatgactgcttctttaagacttgccgatggtgctgttctcattgttgatgct
gctgaaggagtcatggtaaacacagagagagctattcggcatgcaatccaggaccgtctc
cctattgttgttgtgatcaataaggttgacaggctcataactgagctcaaacttcctcca
agggatgcttactacaagcttagacatacaattgaagtcattaataaccacatatctgtt
gcttcaacaactgctggaaacttaccccttatagaccctgcagctggaaatgtatgtttt
gccagtgggacagctggatggtctttcacattgcaatcttttgctaaaatgtatgccaag
ctacatggggtggccatggacgtggagaagtttgcatctcgactttggggagatgtttat
tatcatcctgatactagggtattcaagaaaaatcctccagtaggtggtggagaaagagca
tttgttcagtttattctggagcctctatacaaaatatacagccaagtgataggtgaacat
aagaagagtgtggagaccacccttgcagaattaggagtgactctgagtaatagtgcatat
aagctaaacgtcagacctctacttaggttagcctgtagctcagtttttggttcggcatca
gggttcactgatatgttggtaaagcacattccttctcctagagaggctgcagctaggaaa
gtcggtcatgcatacactgggccaacagattcccccatttatgagtcaatggtagaatgt
gacccatctggacctctcatggttaatgtgacaaagctgtaccctaaatcagatactagt
gtgtttgatgtgtttggaagagtttatagtggtaggcttcaaacagggcaaagcgtacgt
gtactaggagaagggtattcacctgatgatgaggaggacatgactagaaaagaagtgacc
aagctatggatatatcaagcaaggtatagaataccagtaagcagtgcccctcctggttca
tgggttctaattgaaggtgttgatgcgtccatcatgaaaactgcaactctgtgtgattca
atttacgatgaagatgtccacatattccgagcgctccaatttaataccctctcagtagtg
aagactgctactgagcctttgaatcctagtgagctgcccaaaatggtggaagggcttaga
aaaattagcaaaagctatccccttgcgattaccaaagtcgaggagtctggagaacatact
attctaggcacgggagagttgtacttagactccatcatgaaggacctcagggagctctat
tcagaggtcgaagtaaaggttgcagatccggtggtctccttctgtgagacagtggttgaa
tcttcgtcgatgaagtgttttgctgagactccaaacaaaaagaacaaaataacaatgatt
gcagagccattggacagagggcttgcagaggacattgagagtggcatcgtaagcattgac
tggaacaggaaacaactcggggacttcttcaagacgaagtatgactgggatctacttgct
gcacgttccatttgggcttttggtcctgacaaacaggggccaaatattttattggatgac
accctcccaactgaggtcgacaggaacttgatgatggcagtgaaagactccattgttcaa
gggttccagtggggtgcccgtgaaggtcccctctgtgatgagcccataagaaatgtaaag
ttcaagattgttgatgcacggatagcaccagagccgctgcatagaggatctggtcagatg
attccaacagcaagacgtgttgcatattcagccttccttatggcaactccaaggctgatg
gaacctgtgtactatgttgagatacaaacaccaatcgactgtgttactgcaatctacaca
gtattgtcacgtagacgtgggcacgtcacatctgatgttcctcagcctggtactcccgct
tacattgtgaaggcttttctacctgtgatagaatcgtttgggtttgagacagacctgagg
taccacacacagggacaagctttctgcgtgtctgtgtttgatcactgggccattgtgcca
ggagaccctcttgacaaaagcatccaactgcgtccacttgagcccgcccctattcagcac
ctagctcgcgaattcatggtcaagacccgccgtagaaagggaatgagtgaagatgttagt
ggcaacaagtttttcgacgaggccatgatggtggagttggcccagcagacgggtgatctt
catcttcagatgatgtga
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