Camelina sativa (false flax): 104726267
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Entry
104726267 CDS
T05044
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104726267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104726267
Enzymes [BR:
csat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104726267
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104726267
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
mRNA_cap_enzyme
AEP-like
Motif
Other DBs
NCBI-GeneID:
104726267
NCBI-ProteinID:
XP_019087662
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All DBs
Position
11:complement(44117410..44122481)
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AA seq
456 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGVNAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLATSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYVHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVRPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWLKLKPEYIRAGSGRFLQA
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagcgttctagtatctctcttcaactggatccaaaaaagc
aaaacctcatctcagaaacgctccaagttccgcaagtttctcgacacttactgcaaaccc
tcagactacttcgtcgccgtaaggctcatcatcccgtcgcttgatagggaacgaggtagc
tacggtctcaaggagtcagtgctcgccacgtgtctgatcgacgcgcttggcatctctcgc
gacgctcctgacgctgttcgtctcctcaattggcgtaaaggaggaaccgctaaagctggt
gtcaatgctggaaacttttccttaattgccgctgaggtattgcaacgtagacaaggaatg
gcttcgggtggtttgactattaaggaattgaatgatttgcttgatcgtttggctacaagt
gagaacagaggtgagaaaacttctgttctttctactctgattcagaagacaaatgctcag
gagatgaagtgggtcattaggataattttaaaagatttgaaactgggaatgagcgagagg
agcatatttcaggagttccatccagatgctgaggacttgtttaatgttacgtgtgacttg
aaactagtttgtgaaaagttgagggatcgacaccaacggcacaagcgccaggatatagag
gtaggaaaagccgtacgacctcagttagctatgcgtatcagtgatgtaaatgctgcttgg
aagaagctacatgggaaagatgtagttgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacactattactctaggaacttccttgaccattctgaa
tacgtgcatgccatgtcggatcttattgtacaaaatatattggtggacaagtgcatcctt
gatggggaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcgaat
caggaaatagccaaggcagcaagggaaggtcttgacagccatagacagttgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaaaaaagtggtcaggcctttaaaaggtcgtctagaagttttagtacct
gaaggtggcctcaatgttcaccgcccttcaggggaacctagttggtctattgttgtccat
gctgctgctgatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatatccgagctggctctggaaggtttttacaagcttga
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