Camelina sativa (false flax): 104726268
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Entry
104726268 CDS
T05044
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104726268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104726268
Enzymes [BR:
csat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104726268
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104726268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
104726268
NCBI-ProteinID:
XP_010443392
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All DBs
Position
11:complement(44112113..44117422)
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AA seq
915 aa
AA seq
DB search
MLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHEL
LKKVVRPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGIVLK
DLESKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRAEA
NVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVW
IESPEKSIVLSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSS
NGTTQKQKESESTHDNPKVNKSSKREKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYFV
NVPRSYSVDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWILD
CCSRNKMLPLQPKYFLHLTEASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSDDLK
SIEYYKKKLCPEKRWSCLFGCCVYFYPYSETLSTEEEALLAIMAKRLALEVLMGGGKVSN
NLANASHLVVLAITEDSLDFTSVSKSFSEVEKRLLLKRRLHVVNSHWLEDSLQREQKLCE
DVYTLRPKYMEESDTEESDKSEHDITEVASCGSAQIEEPASSKMEIRSSRGRSWTRAVKM
GRSSTNSTHRVQRRRGKQPSKIGGDEKEESDASEEKVSPRLSDIAEETDSFGGAQRNSSR
GESAKRGKSRVAQTQRVQRSRRGKKASKIGGDESEENDGFDDIDNVSADAEESFAAGRSV
ENEEPREPNIAMHTESLHKANTVAVKEASEDSRNAKTEMGMKEKLQIHEDPLQAMLMNMI
PSLSQKNTETSNRITGENRNANVSYDCESSEKRKLGAETDDTSVNADAEADTVPPPVKKK
KVSYRDVAGELLKDW
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgttggtctgggatacatctctgaatcggtttgctgagtttggttcgaatcaggaaata
gccaaggcagcaagggaaggtcttgacagccatagacagttgtgttatgttgcctttgat
gttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacggcatgaactg
ctgaaaaaagtggtcaggcctttaaaaggtcgtctagaagttttagtacctgaaggtggc
ctcaatgttcaccgcccttcaggggaacctagttggtctattgttgtccatgctgctgct
gatgttgagcgatttttcaaagaaacagttgaaaacagagatgaaggaattgtgcttaaa
gacctggaatcaaaatgggaacctggagatcgtagtggcaagtggttgaagttgaagcct
gaatatatccgagctggttctgaccttgatgttcttataataggaggatactatggctcc
ggacgccgtggaggggaggtagcacagtttctcgtcggcttggctgaccgggcggaggca
aatgtgtatcctaggcgatttatgtccttttgtagagttggcactggactttctgatgaa
gaacttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaacacccaaag
aaggctccaccaagcttctaccaggtcacaaaccactcaaaagagagaccagatgtttgg
attgagagcccagagaaatcaatagtactttcaatcactagtgatatcaggacaataagg
tctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaagtaagatat
gacaagccttggcatgaatgtctcgatgtgcaggcttttgtggaattggtgaattcgagt
aacggcaccacacagaaacagaaggaatctgaaagcacacatgacaatccaaaagtcaat
aaatcctccaagagagagaaaaagaatgtgtcgcttgtcccttctcagtttattcaaact
gatgtatcggatatcaagggcaagacctcaatcttctcaaatatgatattttattttgtt
aatgtgcctcggtcctattctgttgatacatttcacaaaatggtagttgagaatggagga
aagttctcaatgaacttaaacaactcagtgactcattgcattgcagcggaaagcagtgga
ataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttcatggatcttagat
tgttgttcacgaaataagatgcttcctttgcagccaaagtacttcctccacctcactgag
gcttcaaggacaaaattacaggatgacattgatgaattctcggattcttattactgggat
ttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatccgatgacttaaaa
tccattgaatactacaagaaaaagttatgtccagagaaaagatggtcctgcctctttggc
tgctgtgtttacttttacccgtatagtgaaacattgagcactgaagaggaagctctgttg
gcaattatggctaagagattagcgcttgaagtcttaatgggtggtggtaaagttagcaat
aatcttgctaatgcgtcgcaccttgtagtccttgctataacagaagactctttggatttt
acttcagtttcaaaaagtttcagcgaagtggagaagcgccttctgttgaagagaaggcta
cacgttgttaactctcactggttagaagacagcttgcaaagagagcaaaaactttgcgag
gacgtctacactctgaggcctaagtatatggaagagtctgatactgaagaatcagataaa
tctgaacatgatataacggaagtagcttcctgtggtagtgctcaaatcgaagagccagct
tcctctaagatggaaattagaagttcaagaggacggtcatggactcgagctgttaaaatg
ggaaggtcttctacaaactcaacgcatcgagtacagagacgcagaggcaagcagccttct
aagataggcggggacgaaaaagaggagagtgatgcttctgaagaaaaagtttcaccacga
ctcagtgatatagcagaagagactgattcgttcggtggggctcagagaaactctagcaga
ggagaatctgcaaagagaggaaagtctcgtgtggcacaaactcaaagagtacagagatca
cgaagaggcaagaaggcttcgaagattggaggagatgagtctgaggaaaatgatggtttt
gatgacatagacaatgtgtcagcagatgcagaagagagttttgcagctggtagatcagtg
gaaaacgaagaacctcgagagcctaacatagcaatgcacacagaatcactgcataaagcg
aacacagtagcagttaaagaggcctcagaagattctagaaatgcaaagaccgagatgggt
atgaaagagaagttacaaatccatgaggatccactacaagctatgttaatgaacatgatc
ccgagcctcagtcagaaaaacacagagacatcaaaccgaatcactggggaaaatagaaac
gctaatgtatcttatgattgtgagtcttcggaaaaaaggaaactcggcgccgagactgat
gatacttctgtgaacgcagacgcagaggcagacacagttcctcctcctgtgaagaaaaag
aaagttagctaccgggatgttgccggagaactgctcaaagactggtaa
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