Camelina sativa (false flax): 104734036
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Entry
104734036 CDS
T05044
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104734036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104734036
Enzymes [BR:
csat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104734036
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104734036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
AEP-like
Motif
Other DBs
NCBI-GeneID:
104734036
NCBI-ProteinID:
XP_010451850
LinkDB
All DBs
Position
2:complement(23495233..23502579)
Genome browser
AA seq
1225 aa
AA seq
DB search
MTESIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLATSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVIAECKFDGDRIQIHKNGTEIHYYSRNFLDHSEYVHAMSDLIVQNILVDKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLKKVVRPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI
VLKDLESKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFLSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTHDNPKVTKSSRRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMI
FYFVNVLRSYSVDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFS
WILDCCSRNKMLPLQPKYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQS
EDSKSIEYYKKKLCPEKRWSCLFGCCVYFYPYSQTLSTEEEALLAIMAKRLALEVLMGGG
KVSNNLAHASHLVVLAITEDSLDFTSVSKNFSEVEKRLLLKRRLHVVNSHWLEDSLQREQ
KLCEDVYTLRPKYMEESDTEESDKSEHDTAEVASCGSVQTEEPASSKMEIRSSRGRSSTR
AVKRGRSSTNSTHRVQRRRGKQPSKIGGDEKEESDASEERVSTRLSDIAEESDSFGGAQR
NSSRGESAKRGKSRVGQTQRVQRSRRGKKASKIGGDESEEHDGFDDMDNVSADALESNAA
GRSVENEEIREPNIAKHRESLHKENIVAVEEASEDSRNAKTEMGMREKLQIHEDPLQAML
MNMIPSLSQKNTETSNRITGENRYTNVFNDCESSEKRKLSAETGNTSVNAGADADADAEA
DTVPPPVKKKKVSYRDVAGELLKDW
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatcgatcaaattcagcgtactagtatctctcttcaactggatccaaaaaagc
aaaacctcatctcagaaacgctccaagttccgcaagtttctcgacacttactgcaaaccc
tcagactacttcgtcgcagtacgactcatcatcccgtcgcttgatagggaacgaggtagc
tacggtctcaaggagtcagtgctcgccacgtgtctgatcgacgcgcttggtatctctcgt
gacgctcctgacgctgttcgtcttctcaattggcgtaaaggaggaaccgctaaagctggt
gccaatgctggaaacttttctttaattgctgctgaggttttgcaacgtagacaaggtatg
gcttcaggtggtttgactattaaggaattgaatgatttgcttgatcgtttggctactagt
gagaacagaggggagaagacttctgttctttctactctgattcagaagacaaatgctcag
gagatgaagtgggtcattaggataattttaaaagatttgaaactgggaatgagcgagagg
agtatatttcatgagttccatccagatgctgaggacttgtttaatgttacgtgtgacttg
aaactagtttgtgaaaagttgagggatcgacaccaacggcataagcgccaggatatagag
gtaggaaaagccgtacggcctcagttagctatgcgtatcagtgatgtaaatgctgcttgg
aagaagctacatgggaaagatgtaattgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacactattactctaggaacttccttgaccattctgaa
tacgtgcatgccatgtcggatcttattgtacaaaatatattggtggacaagtgcatcctt
gatggggaaatgttggtctgggatacatctctgaatcggtttgctgagtttggttcaaat
caggaaatagccaaggcagcaagggaaggtcttgacagccatagacagttgtgttatgtt
gcctttgatgttctttatgttggcgatactagcgtcatccaccagagtttgaaggaacgg
catgaactgctgaaaaaagtggtcaggcctttaaaaggtcgtctagaagttttagtacct
gaaggtggtctcaatgttcaccgcccttcaggggaacctagttggtctattgttgttcat
gctgctgctgatgttgagagatttttcaaagaaacagttgaaaacagagatgaaggaatt
gtgcttaaagacctggaatcaaaatgggaacctggagatcgtagtggcaagtggttgaag
ttgaagcctgaatatatccgggctggttctgaccttgatgttcttataataggaggatac
tatggctccggacgtcgtggaggggaggtagcacagtttctcgtcgccttggctgaccgg
gcagaggctaatgtgtatcccaggcgatttctgtccttttgtagagttggcactggactt
tctgatgaagaacttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggctccaccaagcttctatcaggtcacaaatcactcaaaagagagacca
gatgtttggattgaaagcccagagaaatcaataatactttcaatcactagtgatatcagg
acaataaggtctgaggtgtttgttgcaccttacagtctgaggtttcctcgtattgataaa
gtaagatatgacaagccttggcatgaatgtctcgatgtgcaggcttttgtggaattggtg
aactctagtaatggcaccacacagaaacagaaggaatctgaaagcacacatgacaatccg
aaagttactaaatcctccaggagaggagagaaaaagaatgtgtctcttgtcccttctcag
tttattcaaactgatgtatcggatatcaagggcaagacatcaatcttctcaaatatgata
ttttattttgttaatgtgctccggtcttattctgttgatacatttcacaaaatggtggtt
gagaatggaggaaagttctcaatgaacttaaacaactcagtgactcattgcattgcagcg
gaaagcagtggaataaagtatcaggcagcaaagcgtcagcgagatgtcatccacttttca
tggatcttagattgttgttcacgaaataagatgcttcctttgcagccaaagtacttcctc
cacctcactgatgcttcaaggaccaaattacaggatgacattgatgaattttcggattct
tattactgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatcc
gaagactcaaaatccattgaatactacaagaaaaagttatgtccagagaaaagatggtcc
tgcctctttggctgctgtgtttatttttacccgtatagtcaaacattgagcactgaagag
gaagctctgttggcaattatggctaagagattagcgcttgaagttttaatgggtggtggt
aaagttagcaataatcttgctcatgcgtcgcaccttgtagtccttgctataacagaagac
tctttggatttcacttcagtttcaaaaaatttcagcgaagtggagaagcgccttttgttg
aagagaaggctacacgttgttaactctcactggttagaagacagcttgcaaagagagcag
aaactttgcgaggacgtctacactctgaggcctaagtatatggaagagtctgatactgaa
gaatcagataaatctgaacatgatacagcggaagtagcttcctgtggtagtgttcaaacc
gaagagccagcttcctctaaaatggaaattaggagttcaagaggacggtcaagtactcga
gctgttaaaaggggaaggtcttctacaaactcaacgcatcgagtacagagacgcagaggc
aagcagccttctaagataggcggggacgaaaaagaggagagcgatgcttctgaagaaagg
gtttcaacaagactcagtgatatagcagaagagtcagattcgttcggtggggctcaaaga
aactctagcagaggagaatctgcaaagagaggaaagtctcgtgtaggacaaacccaaaga
gtacagagatcacgaagaggcaagaaggcttcgaagattggaggagatgagtctgaggaa
catgatggttttgatgacatggacaatgtgtcagcagatgcattagagagtaatgcagcc
ggtagatcagtggaaaacgaagaaatccgagagcctaacatagcaaagcacagagaatca
ctgcataaagagaacatagtagcagttgaagaggcctcagaagattctagaaatgcaaag
accgagatgggtatgagagagaaattacaaatccacgaggatccactacaagctatgtta
atgaacatgatcccgagcctcagtcagaaaaacacagagacatcaaaccgtatcactggg
gaaaatagatacactaatgtttttaatgattgtgagtcttcagagaaaaggaaactcagc
gccgagactggtaatacttctgtaaacgcaggcgcagacgcagacgcagacgcagaggca
gacacagttcctcctcctgtgaagaaaaagaaagtcagctaccgggatgttgccggagaa
ctgctcaaagactggtaa
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