Camelina sativa (false flax): 104787318
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Entry
104787318 CDS
T05044
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104787318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104787318
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104787318
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
104787318
NCBI-ProteinID:
XP_010511186
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All DBs
Position
5:21156047..21164863
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AA seq
948 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEEPTDGGGDLIPVDITRPNPNGFEFDNLYLDMNGIIH
PCFHPEGKPAPATYDDVFKSMFEYIDHLFTLIRPRKILYLAIDGVAPRAKMNQQRSRRFR
AAKDAAEAEAEEDRLRKEFETEGQILSAKEKAETADSNVITPGTPFMAILSVALQYYIQS
RLNRNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLS
LATHEVHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGSTNAASDIPIHKKKYQFL
NIWVLREYLQYELAIPDPPFVINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
HVYRKEFSVMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMENNEEMKQRS
RRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFCTTNPEETEQIKQDMVLKYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPG
EYRKLMTDPSSPILKFYPADFEIDMNGKRFAWQGIAKLPFIEEKLLLTATRKLEETLTVE
ERQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWISE
RNGFQTRVDSPVNGLPWIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSADIKPFP
PLWHEDNSNRRRQARDRPQVAGAIAGPSLGEAAHRLIKNTLNMKSSTGSASGLIDPNGYY
RNVPGNHYYGGVNRPRAPGPSSHRRAYDDDSSYYYYGKYNNSSQGTFSNGPRYPGPSNGS
QDYNRNYNSKVVVEQQNRGGLRAGMSGLSIEDNGSRSKQLYSSYTEAANANLNPLPSPPT
QWIGTQPGGNFVGGYYREGVGYGETNGKPVKKVIYQAKTQPSHRGANI
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttttacagatggctcgccgaccgataccccaagtcaattagcgac
gtcgttgaggaagaacctaccgatggaggtggtgacctaatccctgttgatatcaccaga
cctaacccgaacggctttgaatttgataatttgtatctcgacatgaatggtatcattcat
ccttgtttccaccctgaaggaaagcctgcaccagccacgtacgatgatgtatttaaatcg
atgtttgagtacattgaccatctttttaccttaatacgtccgaggaagattctttatttg
gctatagatggtgttgcacccagagcaaagatgaatcagcagcgttctcgacgtttcagg
gctgcaaaggatgctgcagaggctgaagctgaggaagatagattgagaaaagaatttgag
actgagggccaaatcttgtctgctaaagaaaaagcagaaaccgccgattcaaatgtcatt
actcctgggaccccttttatggctatactctcagtagctcttcagtattacatccaatct
aggttgaaccgtaaccctggctggagatatgttaaggtaatactttctgattcaaatgtt
ccgggcgaaggagaacacaagataatgtcatacattcgtctccaacgtaatcttcctggt
tttgatccaaatacacggcattgtctatacggtctggatgcagatttgataatgctctct
ctagccacacatgaagttcacttttcaatcttaagagaggttatcacttaccctggccaa
caagagaaatgctttgtgtgtggacaaactggtcactttgcggcagattgccctggaaaa
tcaggtagcacaaatgcagcatctgatattccaatccacaagaaaaaataccagttcctg
aacatttgggtgttgcgagaatatctgcaatatgaattggcaattccagatcctcctttt
gtgatcaattttgagagaattatagacgactttgtattcctttgcttttttgttggcaat
gacttccttcctcatatgcctacattggaaattcgagagggagctataaacttgctgatg
catgtttacagaaaggagttttcagttatgggaggctatttaacagattctggtgaggta
ttactagatagggtagagcatttcattcaagctgttgctgttaatgaagataaaatattt
cagaaaagaacacggataaaacagtcaatggagaacaatgaagaaatgaaacaacgatca
agaagagatccatctgaggtaccacctgaaccgatagacgataagattaagctaggagaa
ccaggctacaaggagaggtattatgcagagaaattttgtacgaccaatccagaggaaact
gagcaaattaaacaagacatggtactaaaatatgttgaaggtttgtgctgggtttgccgg
tactactaccaaggtgtatgctcttggcaatggttttacccataccattatgctccattt
gcttcagatcttaagaatctatctgatttggagatcacatttttcattggagagcccttt
aaaccttttgaccagttaatggggacactgccggctgcaagttcaaatgctctgcctgga
gaataccggaagttgatgactgatccctcatccccgatcctgaaattttaccctgccgat
tttgagattgacatgaatggaaagcgcttcgcctggcagggtattgcaaaacttcctttc
attgaggagaaattattgttaactgctacaaggaagcttgaagaaacgctaacggtggaa
gaacggcaacgcaacagcgtgatgcttgacttgttatacgtacaccccgctcatccactg
ggccaacggattctgcagtactaccatttctaccagcacatgcctccacatgaatgtctt
ccatggatgattgacccgaattctagccaaggaatgaacggttttctctggattagtgaa
aggaatggtttccaaactagagtggattcccctgtcaatggtttgccatggattgagcag
aaccgagccttaaacgttacgtacctgtgtcctgccaaacactctcatatctcagaacca
ccaagaggagcgatcattccggacaagatcttgacgtcagcagatataaagccatttccc
cctttatggcatgaagacaatagcaaccgacgtcgacaagcccgagataggcctcaagtg
gctggagctatagccggaccttcgctgggagaagcagctcatcgtctgatcaaaaacacc
cttaacatgaaatcctctactggttcggcttcaggattaattgacccaaatggatactac
cgtaatgtaccgggtaatcattattatggtggagtcaatagaccaagagcaccgggtccc
tcttctcacaggagagcttatgatgatgactcgagctattactactatggaaagtataac
aatagctcacagggaacgtttagcaacggtccaagatatcctggtccatcaaatggatca
caagactataaccgaaactacaactccaaggtagtagtagagcagcaaaaccgtggtgga
cttagagctggaatgtctggtttatcgatagaagataacggaagcagaagcaaacagttg
tattcaagttatacagaagctgctaatgcaaatttgaacccgttaccctcaccacccacc
caatggatcggtacacagccaggaggtaatttcgtcggtggatactacagggaaggagtt
gggtatggtgaaacaaatggaaagccggtaaagaaagtaatttatcaggccaagacacaa
ccaagtcatcgaggcgcaaacatatga
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