Cannabis sativa (hemp): 115712885
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Entry
115712885 CDS
T08987
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115712885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115712885
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115712885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
ORC-CDC6-like
AAA_24
SMC_N
nSTAND3
FtsK_SpoIIIE
NACHT
VapE-like_dom
AAA_25
DUF5906
AAA_18
AAA_33
SRP54
Motif
Other DBs
NCBI-GeneID:
115712885
NCBI-ProteinID:
XP_030497160
UniProt:
A0A803PGL3
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Position
4:complement(81896117..81900630)
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AA seq
280 aa
AA seq
DB search
MADQSSNGGGGIEVCGLQFSYDGQPPLFVNFDLDIKPGSRCLLVGANGSGKTTFLKILGG
KHMVGGKDVVQVLNRSAFHDTNLVCSGDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFG
VEGSDPVRRDKLIELLDIDLKWKMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVV
ARLDLLDFFKEECEQRGATIVYATHIFDGLETWATHLAYIQDGKLKRSEKLTEIAELNNS
ANLLSVVESWLRSEVKLDKKKPQIQKTSPFFSSRHMAYYR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcagagttcgaacggtggcggtgggattgaggtgtgtgggttgcaattcagc
tacgatggacaacctccgctcttcgtcaatttcgatctcgatattaagcctggatctcga
tgtttattggttggcgccaatggatctgggaaaacaacgtttttgaagattttgggtggt
aagcatatggttggagggaaagatgttgtgcaggttttgaatcgttcggcttttcacgat
accaatttggtttgtagcggtgatttggcttatttgggtggatcttggagtaaaaccgtt
ggctctgctggagaaattccactccaaggagacttctctgctgagcatatgatatttgga
gttgaagggagtgatcctgttagaagagacaaattgattgagctacttgatattgacctg
aaatggaaaatgcataaagtatcagatgggcagaggcgtagagtccaaatctgcatggga
cttcttcacccatttaaggttctgttgcttgatgaggtaacagtcgacttagacgttgtt
gctagactagacttactcgatttcttcaaagaagaatgtgaacagagaggagcaactata
gtatatgcaacccatatctttgatgggttggagacatgggcaactcatctggcttatatt
caagatggtaagcttaagagatctgagaagttaaccgagatagccgagttaaataactcg
gctaatctcctttctgttgtcgagtcttggcttcgttctgaagtcaagctcgataaaaaa
aaacctcaaatccaaaagacctctccttttttttcatcaagacacatggcttattaccgt
tga
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