KEGG   Cannabis sativa (hemp): 115716698
Entry
115716698         CDS       T08987                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115716698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csav03021]
    115716698
Enzymes [BR:csav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115716698
Transcription machinery [BR:csav03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     115716698
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 115716698
NCBI-ProteinID: XP_030501420
LinkDB
Position
5:34064356..34079537
AA seq 1450 aa
MRSSGLMGKELHEDEEVPCGILTAITFTVSTREVTEKISEISIENVNEVTDSRMGLPNLS
LECTTCGAQNIRRREGVPYQENKSCEGHFGHIKFPFTILQPYFLSEVAEILNNVCPSCKR
IKPSQRVKGANSVNDDHQPTGCKYCTRSSEGRYHPMKFKVSSTDLFRRSAIIVEVVNENN
AKFQKKLREMPDDYWNFLIPDEQVDESSNKSHRRVLSHAQVYHLLKDVDPTFIKKFVPRL
DSLFLNSFLVTPNCHRVTEFTHAFSNGQRLTFDERTRTYRKLVDFRGVANELAARVLDCM
KIAKLNSDNSLSKDVVLAQQKIKDSPSKTSGLRWVKDVVLGKRSDHCFRMVVVGDPNIKL
NEIGIPSNVADKMYISENLNRWNLERSDACWNVCFIEKGGIRVRRNGHLVKVRPMDELRI
GDTIYRPLRDGDIVLINRPPSIHQHSLIALSTKVLPTNSVLSLNPLCCSPFRGDFDGDCL
HGYVPQSVETKVELKELVGLDRQLINGQSGKNLLSLNQDSLVAAHLVMEDGVLLTRYQIQ
QLEMFCLNHQLFPAILKAPLLNCPVWTGKQLFSAILPSGFDYFCDSNGVNIANGEIIASE
GSSWLRDTNSNLFQNLIKYAPSKVLDTLFAAQEVLCEWLSMRGLSVSLLDLNLTSDLYSR
RNLMHEIFYGLQEAEQTCMFKQVLNSFHKALTDSDEEIPRSTSVQVERLCYEKQTSAALS
QVSIDAFKQVFRDIQSLAFKYANKDNSLLAMFKAGSKGNLPKLVQQSMCLGVQHSLVPLS
FSIPHTLSCNGWNNHKESGLSKNAVDDGPKYSGSYIPYAVVENSFLTGLNPLECFVHSIT
NRDSTFSDNAELPGTLTRRLMFFMRDMHTAYDGTVRTGSGNQIVQFSYNTDVGRTSSTVC
DGIGGKPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNALECGSRKSKASQTMSLYL
SKKLGRQMHGFEYGALEIKNYLQRLKFSSIVSTVMIIYTSTAGSQRQFSPWVCHFHINKE
ILRKRKLNLHTVINNLRQGWYEILNRSKDNLPNCQIKSSGCSTMDKEKDSYCIVVRAENF
QNSYIELEKVQEKVLPAMLEIVVKGFQEIKSIDILWNDRSSSPGELYLRVSMTRVCKRRL
WGTLMDHCLKIMDLIDWSRSHPDNMNEFCSVYGVDAGWKYFLNNLESAVSDVGKSILPEH
LLMVANSLSTTGYFVGLTPKGLAQQRGNASAPSPFTQACFSNPAGCIIKAAKAEVTDGLK
GSLDALAWGKTPPFGTGGQFELIYSEKGHEINKPADVYDLLGASISDKENVMEKPNAVKM
FARLLSKLGILNIKKYLNVNDIWKLECDLQSILKKYEIDERLNDVDKSILLFALNFHPEK
DRKIGVGAQDIKVAYHKEHENSRCFMLVRVDGTVEDFSYRKCVRGALEIIDPTKAMTYRT
KKQNTKWDMS
NT seq 4353 nt   +upstreamnt  +downstreamnt
atgaggtcatctggcctcatggggaaggagttgcatgaagatgaagaagtgccttgtggt
atcctaactgccataacttttactgtttcaactcgtgaagttacagaaaagatatctgag
atatcgattgagaatgtcaacgaggttaccgattcgagaatgggactcccaaatctatct
cttgaatgcaccacatgtggtgctcaaaatataaggcgccgcgaaggtgttccctatcaa
gaaaataagagctgtgaaggtcattttggccatatcaagtttcctttcacaatactacaa
ccatattttctatcagaagttgcagagatactaaacaatgtttgtccgtcatgtaaaaga
atcaagccatctcaacgagtcaagggtgccaactctgtaaatgatgatcatcagcctacg
ggttgcaaatattgtactagaagttccgaagggaggtatcatccaatgaaattcaaagtt
tcttcaactgatctttttagaagaagtgcgattatagtagaggttgtaaatgaaaacaat
gcaaaattccaaaagaaactaagagagatgccagatgattattggaattttttgatacct
gatgaacaagtagatgaaagtagcaataaatcacaccgaagagttttgtcacatgcgcag
gtctatcatttgctgaaggatgtcgatcctacattcataaaaaagtttgttccaaggcta
gattcactctttttgaacagtttccttgtaacaccaaattgtcatcgcgtgactgaattt
acacatgcattttccaatgggcagcgattgacttttgatgaacggaccagaacataccgt
aaattggttgatttcagaggagtggcaaatgagttggctgctcgtgttttggattgcatg
aaaattgctaagttaaactctgacaactctttgagtaaagatgtggttcttgctcagcaa
aagattaaagactctccttcaaaaacatcgggtttgagatgggtcaaagatgttgttttg
gggaaacgcagcgatcattgttttcgcatggttgttgttggtgatccaaatatcaaactt
aatgaaatcggcataccttctaatgttgctgacaaaatgtacatttctgagaatttgaat
agatggaacttagaaagatcagatgcgtgttggaatgtatgttttatagagaaaggaggg
atccgcgttcgtaggaatggccatcttgtgaaggtacgccctatggatgaattacggata
ggagacactatatacaggcctctacgtgatggagatattgtgttgattaacaggcctcca
tccattcatcaacactccctcatagctttatcaaccaaggtccttccaacaaactcagtt
ttatcgctaaatccactttgttgttctccctttcgtggtgattttgatggtgattgcctt
catggctatgttccacagtccgttgagactaaagttgagcttaaagagcttgttggttta
gatagacaactgatcaatggacaaagtggtaaaaacttgctttccctcaatcaagacagc
ttagttgctgctcatttggtgatggaagatggtgtcttattgactcgttatcaaatacaa
caattggaaatgttttgtttgaatcaccaattgtttcctgcgatactcaaagctccttta
cttaattgtcctgtttggacgggaaaacaattatttagtgcaatcttgccttcaggtttt
gattatttttgtgattcaaatggtgtgaatatagcaaatggggagattatagcttcggaa
ggatcttcatggttgcgcgacacaaatagcaaccttttccaaaacttgataaaatatgct
ccaagtaaggtactcgatactctatttgctgcccaggaagttctgtgtgagtggttgtcg
atgaggggtctgagtgtttcactcttggatttgaacctcacttctgatttgtactcaaga
agaaacttgatgcacgaaatattttatggcttacaagaagcagagcagacctgtatgttt
aaacaggtgctgaactcctttcataaagcgcttacagattctgatgaggagattcctaga
tccacgtctgttcaagtagaacgtttgtgttatgagaagcaaacgtctgctgcactcagt
caagtttcgatagatgctttcaagcaagtatttcgtgacattcagagtcttgcctttaaa
tatgcaaataaggacaattccttgctggctatgtttaaagctggaagcaaagggaatttg
ccaaagttagttcagcagagcatgtgtcttggggtacaacactcacttgtgccattatca
tttagtattcctcacaccctctcttgtaatggttggaataatcataaggagtctggttta
agcaagaatgctgttgatgatggtcccaagtattctgggtcttacatcccgtatgctgtg
gtggaaaactctttccttactggcttgaatccattagaatgttttgttcattcaatcaca
aatcgtgatagtacgtttagtgataacgctgaacttcctgggactttgacccgaaggctt
atgtttttcatgcgtgatatgcacactgcatatgatggaacggtaagaactggtagtggc
aatcagattgtgcagttctcgtacaatactgacgtaggtcgcacttcctcaactgtttgt
gatggcataggtggtaaacctgttggttccttatctgcttgtgccatttctgaagctgca
tacagtgctttggatcaacctattagtctccttgaaacttctcctctgctaaatttaaag
aatgctttggagtgtggctcaagaaaaagcaaagctagtcaaactatgtcactatatttg
tccaagaagcttgggagacagatgcatggttttgagtatggagccttagaaataaaaaat
tatttgcagagactgaagttttcaagcattgtttctacagtcatgataatctacacctcg
acggccggtagccagagacaattcagtccttgggtttgccattttcatatcaacaaggaa
attttgagaaaaagaaaactgaatttgcacactgtaatcaataatcttcgtcaagggtgg
tatgaaatcttaaatagatccaaagacaacctaccaaattgtcagataaagagcagtggt
tgttctactatggataaagaaaaggattcatattgcattgttgtgagagctgaaaatttc
cagaattcttacatagagttggaaaaggttcaggaaaaagtgttgcctgccatgctggag
atagttgtaaaaggcttccaagaaattaaaagcatagacattctatggaatgatcggtct
agttctcctggagaactctacctcagagtgtctatgacacgtgtttgtaaaagaagactt
tggggtacactcatggatcattgtctcaaaatcatggatttaattgattggtcacgcagt
catccagataacatgaatgaattctgttcagtctatggagtagatgcaggatggaagtat
tttctcaataatttggagtcagcagtatctgatgttggcaagagcatactccccgagcat
ttacttatggttgcgaactctttatcaactacaggatattttgttgggttgactcctaaa
ggcctcgctcagcagaggggaaatgcatctgctccgtcaccctttacacaagcctgcttt
tctaatcctgctggttgcattattaaagcggcaaaagctgaagtcacagatggacttaaa
gggagtcttgatgctttggcatggggaaagactcctccttttggaactggcggacagttt
gagcttatatactcggagaagggacacgagattaataagcctgcagatgtatatgacttg
ctgggtgctagcatttctgataaagaaaatgtaatggagaagcctaacgcagtgaaaatg
tttgctcggcttttatccaagttgggtatattgaacataaaaaaatatttgaatgtgaat
gatatttggaaactcgaatgcgacctacagagtatcttaaaaaagtatgaaatagatgag
aggctaaatgatgtggacaagtccatcttgctgtttgccttaaattttcacccagaaaaa
gatcgtaaaataggcgttggagctcaagacataaaggttgcatatcacaaggagcacgag
aatagtcgatgctttatgttggtaagagtcgatggtactgtagaagatttttcataccgc
aaatgtgtacgtggcgctctggagatcattgaccctacaaaggcaatgacttaccgaacg
aagaaacaaaatacaaaatgggatatgagttag

DBGET integrated database retrieval system