Cannabis sativa (hemp): 115720668
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Entry
115720668 CDS
T08987
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115720668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115720668
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115720668
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
Arf
AAA
AAA_15
AAA_23
AAA_30
ORC-CDC6-like
nSTAND3
AAA_25
Zeta_toxin
AAA_7
Motif
Other DBs
NCBI-GeneID:
115720668
NCBI-ProteinID:
XP_030505691
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Position
2:51238700..51240994
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AA seq
324 aa
AA seq
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MASKQNPEALIEINGLRFTYPGIDGHPPPGSKPLIDNFSLTLNSGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVAIQMDIS
AEKLIFGVAGIDPQRRAELLKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLKFLRKECEEKGATIIYATHIFDGLEDWPSHIVYVAKGTLQLAMPMDK
VKEISKLSLMRTVESWLRKEQDEERKIRKERKERGLPEFEDKIDGSRVAGGPRAVNNGWA
AGRLNSTVAGEDNFVYSSNRVLRQ
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaacagaatccagaggcactgatcgagatcaacggactcaggttcacctac
cctggaatcgacggccatcctcccccgggctccaagcctctgatcgataacttctccctc
actctcaactccggcgaccgctgccttcttgtcggatctaatggagctgggaaaacgaca
attttgaagatattgggagggaagcacatggtggagcctcatatggttcgagtgctcgga
aggtcggcatttcatgacactgctcttacctcatctggtgatctctgctatcttggagga
gagtggaggcgagatgttgcttttgcagggtttgaagttgcaattcaaatggatatttct
gctgagaaattgatatttggggttgcaggaattgatccccaaagaagagctgaactattg
aaggttctagacattgatctttcatggagaatgcataaagtatccgatggccagagaagg
cgggtccaaatatgcatgggtctcctgaaaccatttaaggttctgcttcttgatgagata
acagttgaccttgatgtgctagcaagagctgatctgttaaagtttctgagaaaagaatgt
gaagagaaaggtgccacaattatatatgcaacacatatatttgacggtctagaggattgg
ccatcacatattgtatatgtagccaagggaacattgcaactagcaatgcctatggataaa
gttaaggagattagcaaattgtctttaatgagaacagttgaaagttggctgagaaaagaa
caagacgaagagaggaagataaggaaggaaagaaaggaaagaggtcttcctgaatttgaa
gacaagatagatggaagccgtgtggctggcggtccacgtgcagtcaataatggttgggca
gccggaagactgaactccaccgttgctggagaagataactttgtttacagctcaaacaga
gtcttaagacagtaa
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