Cannabis sativa (hemp): 115725017
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Entry
115725017 CDS
T08987
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
115725017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115725017
Enzymes [BR:
csav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115725017
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
115725017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
TPGS1_C
LIG3_BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
115725017
NCBI-ProteinID:
XP_030510278
UniProt:
A0A803Q812
LinkDB
All DBs
Position
6:54972669..55016642
Genome browser
AA seq
1225 aa
AA seq
DB search
MAEETKFSVLCSLFNWMLRSKTSAKKRSKFRKFLDNFCKPADYFSAVRLILPNLDRERGS
YGLKESVLATSLIDALGMARDSPDALRLINWRKGGAKTGANAGNFALVAVEVLERRQGMT
SGGLTIRELNELLDRLASCENRSEKISVLAMLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLSDRSQRHKRQDIEVGKAVRPQLAMRVADATVAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHAMSDVIVRNVTADRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAAREGFDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKIVKPLKGRLEFLVPNGGTHYPPGEACWSRIAHNVDDVERFFKETIENRDEGIVLK
DLGSKWEPSDRSGKWLKLKPDYVRAGSDLDVLIVGGYYGSGRRGGEVAQFLVGLAERPAP
NTHPRRFISFCRVGTGLSDEELDAVVNKLKPYFRKYDYPKKAPPNFYHVTNNSKERPDVW
IDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELVQTG
NGTTHKGTDSGGVQQSKKTFTKPSTRKGKRNLSAVPSHLVRTDISGVKEDTLIFSGMMFY
FANVPPTHSLESFHKVIAENGGTFSMNLNSSVTHCVAAESKGIKYQAAKRQGDIVHYSWV
LDCCSQRKLIPLQPKYYLFLSDFSKKKLQEDIDEFSDTYYWDLDLADIKQLLSNVNGAQH
TRTTDHYKKKHWPPKWSYFHDCFIYFYAPLQYLKPDWEVVLGLALRRLKVEVQMNGGRVS
NSLAQATHLVIFFVPGCSLDVEDLLKSFNAMEKRILRKRTLHIVESQWLDDCAASEQRLP
EETYSLKHMLEQQNDENCEYDMDLELDPVENQALSCSSKEDEIDRRDDNDAPKNTEVLTT
LESSRKRGRFAGKSIDKRKPVPKKARRTRPHIGNKPAKISGNESDSVSHEENILKEENKQ
MMEDDKKSSHINKARAGPNKVRRTRARTGKRPAKLSCNESDDDVSHEVNSVKEESKQMEQ
THELIHKSERVEEPQSAVELKEIKQGEESFRHEEWFNKVPEYEMTEKFSCENIPQQKLEV
LTDPVHAMLLDMIPSLGKPKSATTTTNLRIEDDKPPMDINAAPITSKLRIEDDKRLMDVN
AAMPPAEPKRKKVSYRDLASELLKD
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaaaccaagttcagtgtcctctgcagtctcttcaactggatgctcaggagc
aaaacatctgctaagaagcgttccaagtttcggaaatttcttgataacttctgcaaaccc
gccgattacttcagcgctgtacgactcatcctccccaatctggaccgcgagcgtggctcc
tatggcctcaaggagtctgttctagccacttccctcatcgacgctctcggcatggctagg
gactcccctgacgctcttcgcctcatcaattggcgcaaaggtggcgcaaagactggtgcc
aatgctggaaactttgcccttgttgccgtagaagtactagaacgtaggcaaggaatgacg
tctggtggactaacaatcagagagttaaatgagttgcttgatcgtttggcttcatgtgaa
aacaggtctgagaagatttcagttcttgctatgttgattaagaagacaaatgcacaagaa
atgaagtggatcatcatgatcattttaaaagatttgaagttaggaatcagtgaaaaaagt
atatttcatgaattccatccagatgcagaggacttgtttaatgtcacctgtgacttgaaa
ttggtttgtgaaaagcttagtgaccgaagtcaacggcataagcggcaggatattgaagtt
ggaaaggcagtgcgtcctcaactagctatgagagttgccgatgcaactgttgcatggaaa
aagcttcatggtaaggaggtggttgttgaatgcaaatttgatggtgatcgcatacaaatt
cataagaatggaactgaaatacactacttctcgagaaattttcttgatcactctgaatat
ggacatgcaatgtcagacgtcattgtgcgaaatgttactgctgataggtgtatactagat
ggtgaaatgttggtctgggacacatctttaaatcgctttgctgagtttggttcaaatcaa
gaaatagccaaggcagcaagggaagggtttgatagtgatcgacagttatgttatgttgca
tttgatattctttatgtcggcgatactagtgtaattcatcagagcttgaaggaacgacac
gagcttcttcaaaagattgtaaagcccttgaagggtcgccttgaattcttagtacctaat
ggtggaactcattatcctcctggtgaagcttgttggtcgcgcattgctcataatgtggat
gatgttgagagatttttcaaggaaaccattgaaaatagagacgaagggattgttctaaag
gatcttggctctaaatgggaacctagtgatcgaagtggaaagtggttgaaattgaagcct
gattatgttcgtgctggttcggatctggacgttcttattgtaggaggatattatggttct
ggacgtcgtggaggagaggtagctcaattcttggttggccttgcagaacgtcctgcccca
aatacacatccaaggcgatttatttcattctgcagagtgggtactggactctctgatgag
gagttagatgctgttgtaaacaagttgaagccttatttcaggaaatatgattatccaaag
aaagctccaccaaacttttatcatgtcacaaacaattccaaagaaagaccagacgtctgg
attgacagccctgagaaatcaattatactttctattaccagtgacatccgaactataagg
tctgaggtttttgcagcaccatacagcctgaggtttccacgtattgacagagttagatac
gacaagccttggcatgaatgccttgatgttcaatcatttatagagctagtacagactggt
aatggcaccactcacaagggtactgattctgggggagtgcaacagagtaaaaaaactttc
acgaagccttctacaaggaaagggaaaaggaatttgtctgctgttccttctcatttagtt
cgcacagatatttctggtgttaaggaggacaccttaatattttcaggcatgatgttctac
tttgctaatgtgcctccaactcattcattggaatcctttcacaaagtgattgctgagaat
gggggcactttctctatgaatctgaacagttctgtcactcattgtgttgcagctgaaagc
aaaggaattaaatatcaggcagcaaagcgtcaaggggatattgttcattactcatgggta
ttggattgctgctctcaaaggaagcttattcctctacagccaaagtattacctcttccta
tctgacttttcaaagaagaaattacaagaagacattgatgaattttctgacacttactac
tgggatctagaccttgcggacatcaaacagctcttaagcaatgtgaatggagcacaacac
actagaactactgatcattacaagaaaaagcattggccgcccaagtggtcttacttccac
gattgcttcatctacttttatgctccactacaatatttaaaaccagattgggaagttgtg
ttaggtcttgcactgcggcggttaaaggttgaagttcaaatgaatggagggagagttagc
aatagtcttgctcaagcgacccatttggttatcttctttgtcccaggctgttccctagac
gttgaagatttattgaaaagtttcaatgcaatggaaaaacgtattctccggaagcggact
ttacatattgtcgaatctcaatggttggatgactgtgctgcaagtgaacaaagattgcca
gaagaaacatatagcttaaagcatatgttggagcaacagaatgatgaaaactgcgaatat
gacatggatttggagttggatcctgtggagaatcaggctttgtcatgttcctctaaagaa
gatgaaattgataggagagacgacaatgatgccccgaaaaacactgaagtcttgacaaca
cttgaatctagtaggaaacgtggaagatttgctggcaaaagcatagataaaaggaaacca
gtacctaagaaagctcgaagaacacgaccacatattggaaataagcctgctaaaatatct
ggtaatgaatcagatagtgtttctcatgaagaaaacatattgaaagaagagaacaaacaa
atgatggaagatgataagaaaagttcacatattaataaagcaagagcaggacccaataaa
gttcgaagaacacgtgcacgcactggaaaaaggcctgctaaattatcttgcaatgaatca
gatgatgatgtttctcatgaggtaaactcagtcaaagaggagagcaaacaaatggagcaa
actcatgaactgattcataaaagtgagagggtagaagagcctcaatcagcagttgaactg
aaagagattaagcaaggtgaagaaagttttagacatgaagagtggttcaacaaagttcct
gaatatgaaatgactgagaagtttagttgtgaaaacattccacagcagaagctggaagtt
ctgactgatcctgttcatgccatgttgttggacatgattccaagtcttggaaagccgaaa
agtgcaactactactactaatttaagaattgaagatgataaaccaccgatggacataaat
gcagcaccgattactagtaaattaaggattgaagatgataagcggctgatggatgtaaat
gctgcaatgccgccagcagagcctaaaaggaagaaagttagctacagggatctagctagt
gagctgcttaaggattga
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integrated database retrieval system
