Clostridium saccharobutylicum: CLSA_c03820
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Entry
CLSA_c03820 CDS
T02876
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03030
DNA replication
csb03410
Base excision repair
csb03420
Nucleotide excision repair
csb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLSA_c03820 (ligA)
03410 Base excision repair
CLSA_c03820 (ligA)
03420 Nucleotide excision repair
CLSA_c03820 (ligA)
03430 Mismatch repair
CLSA_c03820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csb03032
]
CLSA_c03820 (ligA)
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c03820 (ligA)
Enzymes [BR:
csb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLSA_c03820 (ligA)
DNA replication proteins [BR:
csb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLSA_c03820 (ligA)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLSA_c03820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLSA_c03820 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLSA_c03820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLSA_c03820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_pol_lambd_f
5_3_exonuc
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
POLH-Rev1_HhH
RNA_pol_A_CTD
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AGX41432
UniProt:
U5MPV3
LinkDB
All DBs
Position
412055..414046
Genome browser
AA seq
663 aa
AA seq
DB search
MDKIERIKELVERLNRYSYEYYSLDNPSVTDAEYDKEYYELQDLEKEAGYVLPYSPTLRV
GDVVLDGFTKYTHKARLWSLDKAQTLQEIIDWHNRNVKFVEEMRSKGEDIPDLKYVLTKK
FDGLTINLTYNEEGILEIAATRGTGAIGEEVTAQVKTIKSIPLKIDSHDILEVHGEAVMT
QEAFEKYNETAQTPLKNLRNGAAGALRNLNVKETARRNLSAFFYDVGYKEGSQFKNYIEM
MAFIKEKGLPVDDYIKVCTSIDEIQNEINYIRDIRFDLNYDIDGLVIAIDDIRTRELLGY
TVKFPKWAIAYKFEAQETTTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNMD
DIKRKGVRIGADVFVRRSNDVIPEIMGVVQETLEGTEEITPPTVCPSCGSKIVLEGAHYF
CDNTLSCKPQMVKSIVHYACREAMNIAGFSEKTAEQLFEKLNIKSISDLYKLKEEELVGL
EKFGPKKAQNLLESIEKSKDCELHAFVYALGIPNVGVKTAKDLVNRFKSLEGLKNATFEE
LVGVQDVGDVVAQDVMAFFKEEKVIATIDELLDLGVSPKFTEKEVVESPFEGKTVVATGS
LKNYSRTEIKEKLESLGAKVSGSVSKKTDYVIAGEAAGSKLTKAQELGVKVLSEEEFEEI
LRG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggataaaattgaaagaataaaagagcttgtggaaagattaaataggtattcatatgaa
tattattctttagataatccatctgtaacagatgcggagtatgataaagaatattatgaa
cttcaagatttagaaaaagaagcaggatatgttcttccatattcaccaactcttagggtt
ggtgatgtagttttagatggattcacaaagtatactcataaagcaaggctttggagttta
gataaagcacaaactttacaagaaattattgattggcataacagaaatgtaaagtttgtt
gaagaaatgagaagcaagggagaagacattcctgacttaaagtatgttttaactaagaag
tttgatggtttaacaataaacttaacatataatgaagaaggtatacttgaaatagcagca
acacgtggaactggtgcaattggagaggaagtaacagcacaagtgaaaacaataaaatcc
attcctcttaaaattgatagtcatgatattcttgaagtgcatggtgaagctgtaatgact
caagaagcttttgaaaaatataatgaaactgctcaaacaccattgaagaatctaagaaat
ggagcagcaggtgctttaagaaatcttaatgtaaaagaaacagcaagaagaaatttatca
gcctttttttatgatgtaggttataaagaaggaagtcaatttaaaaattatattgaaatg
atggcgtttataaaagaaaaaggccttccagttgatgattatattaaagtatgtacatca
atagatgaaatacagaatgaaataaattatataagagatataagatttgatttaaattat
gatatagatggattggtaattgctattgatgatataagaacaagagaattacttggatat
actgttaaatttcccaaatgggcaattgcctataaatttgaggctcaagaaacaactact
aagcttttagatgttgaatggaacgtaggtagaagtggaagagttggaccaacagcaatt
ttagaaccagtggaacttgcaggagttactgttaaaagagcaacattaaataatatggat
gatatcaaaagaaaaggtgttagaataggtgcagatgttttcgttagaagaagcaatgat
gttatacctgaaataatgggtgttgtacaagaaacgttagaaggcactgaggaaattaca
ccacctacagtttgcccatcctgcggaagtaaaattgttttagaaggagctcattacttt
tgtgataatactttatcttgtaaaccacaaatggttaaaagtattgttcactatgcttgc
agagaagctatgaatatagcgggattctcagagaaaacagcagaacaattatttgaaaag
ttaaatattaaatctatttctgatttatataaactaaaagaagaggaattagttggctta
gagaagtttggacctaaaaaagcacaaaatcttttagaatctattgaaaaaagtaaggat
tgtgaattacatgcatttgtatatgcacttggaattcctaatgtgggagtaaaaacagct
aaggatttagtaaatagatttaaatctttagaagggttaaagaatgcaacgtttgaagag
cttgttggagtgcaggatgttggagatgtagtagcacaagatgtaatggcattttttaaa
gaagaaaaggtaatagctacaatcgatgaattgcttgatttaggtgttagtcctaaattt
actgaaaaagaagtagttgaaagtccttttgaaggaaaaacagttgttgcaactggttcc
ttaaagaattattctagaacagagataaaagaaaaattagaaagtttgggtgctaaagta
tctggcagcgtcagtaagaaaacagattatgttatagctggagaagctgctggttcaaaa
ttaactaaagcacaggaactaggagttaaagttctttcagaagaggagtttgaagaaata
ttaagggggtag
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