Citrobacter sedlakii: JY391_06945
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Entry
JY391_06945 CDS
T07832
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csed
Citrobacter sedlakii
Pathway
csed03030
DNA replication
csed03410
Base excision repair
csed03420
Nucleotide excision repair
csed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JY391_06945 (ligA)
03410 Base excision repair
JY391_06945 (ligA)
03420 Nucleotide excision repair
JY391_06945 (ligA)
03430 Mismatch repair
JY391_06945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csed03032
]
JY391_06945 (ligA)
03400 DNA repair and recombination proteins [BR:
csed03400
]
JY391_06945 (ligA)
Enzymes [BR:
csed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JY391_06945 (ligA)
DNA replication proteins [BR:
csed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JY391_06945 (ligA)
DNA repair and recombination proteins [BR:
csed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JY391_06945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JY391_06945 (ligA)
MMR (mismatch excision repair)
DNA ligase
JY391_06945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JY391_06945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QUC31460
LinkDB
All DBs
Position
1462851..1464866
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQELTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEARHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGILVRAATRGDGTTGEDITTNVRTIRAIPLRLHGDNIPERLEVRGEVFLPQAG
FEKINEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLMQFKAWGLPVSNRVTLCDSPEAVLAFYRQVEEDRPTLGFDIDGVVIKVNSLALQEQL
GYVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVLSDRPDNTRPVEFPAQCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAEGVRWPAPVAINPAEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaagaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctttaccatgtgatggatgcgccggaagtgcccgacgcggagtacgatcgtctgatgcgc
gagctgcgcgagttggaagcccggcacccggaattgatcaccccggactcgcctacccag
cgggttggggcggcgccgttggcctcgttcagccagattcgtcatgaagtaccgatgctg
tcgctggacaacgtgtttgacgaagagagcttcctggcgtttaacaaacgcgttcaggat
cgcttaaaaagcaccgataaactgacctggtgctgcgagctaaagcttgatggtctggcg
gtcagcattctgtatgaaaacggcatattggtcagggccgcaacccgtggcgacggaacc
accggggaagacattaccaccaacgtgcgcaccatccgcgccatcccgctacgtctgcat
ggcgataacattcctgagcgtctggaagtgcgcggagaagtctttctgccccaggccggt
tttgaaaaaatcaacgaagaggcgcgtcgtaccgggagcaaagtcttcgctaacccgcgt
aatgcggccgcgggttcgctacgccagcttgacccacgtattacagcgaagcgaccgctg
actttcttctgttacggcgttggtatcctggaagggggcgaattgcccgatacccacctg
ggccgactgatgcagtttaaggcgtggggattgccggtgagtaatcgcgttacgctgtgc
gattctccggaagcggttctggcgttctaccgtcaggtggaagaagatcgcccaacgctg
ggcttcgatattgacggcgtggtgatcaaagtgaactcactggcgctgcaggaacagctt
ggctacgttgcccgcgcgccgcgctgggcagtggcgtttaaattcccggcccaggaacag
atgacctttgtccgcgacgtggaatttcaggtggggcgtacgggcgccatcacgcctgtc
gcgcggctggagcccgtacaggtggctggcgtgttggtcagtaacgccacgctgcacaat
gccgatgaaatcgcccgtcttgggctgcggattggcgacaaagtggttattcgccgggcg
ggcgacgtgatcccgcaggtcgtcaatgtggtgctctccgaccgtccggataatacgcgt
ccggttgaatttccggcccagtgcccggtttgcggttctgacgtcgagcgcgtggaaggc
gaagccgttgcccgctgtaccggcggcttaatctgcggcgcgcagcggaaagagtcgctg
aaacatttcgtttcccgtcgggcgatggacgttgacggaatgggcgacaaaattatcgac
cagttggttgagaaagagtatgtgcatacgcctgcggatctgttccggctgacggcagga
aaactgaccgggctggaccgcatggggccgaagtcggcgcaaaacgtggtggacgcgctg
gaaaaggcgaaggagacaacgttcgcgcgttttctctatgcgctgggtattcgcgaagtc
ggtgaagcgaccgccgcgggattagccgcgtacttcggtacgctcgacgccttagaagcg
gcgtcgatagatgagttgcagaaagtgcctgacgtgggaattgtggtggcgacccatgtg
tttaatttctttgcggaagaaagcaaccgcgaggttattggccaactactggcggaaggc
gtgcgctggcccgcgccggttgcaatcaatcccgcagaaatcgacagccccttcgccggt
aaaacggtggttctgaccggcagcctgagccagatgtcccgtgatgacgccaaagcgcgt
ctggtggctcttggggcgaaagtggcgggcagtgtgtcgaaaaaaaccgatctggtgatt
gccggtgaagcggcaggatcgaagctggcgaaagcccaggagctgggcatcgacgttatt
gacgaagcggaaatgctccgcctgctgggtgcctga
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