Cynoglossus semilaevis (tongue sole): 103377452
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Entry
103377452 CDS
T04866
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csem03036
]
103377452 (smchd1)
03400 DNA repair and recombination proteins [BR:
csem03400
]
103377452 (smchd1)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103377452 (smchd1)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103377452 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
Coat_P
Motif
Other DBs
NCBI-GeneID:
103377452
NCBI-ProteinID:
XP_008306490
LinkDB
All DBs
Position
3:complement(14785152..14801403)
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AA seq
1950 aa
AA seq
DB search
MSQDTLADGADRRSRRILVCDCRSDVLVTSRMDATFSDYNDFLCDLRKKFSINSGQTFVL
TTTDRTVLDFDTFAELQDGCTLYLLLEVNQVLPTAMEEQITFTPHYNTIIKCGIDEYYTT
KGREALPYALAELIDNALSATVNNKDRRTVELRMLFDNTRGIPTIVVLDNGHGMNSKGLN
NWAVYRLSKFNRKNNQLESQCQGYEPPTPTRRSLNSDISFFGVGGKQAVFFFGDSVRMIS
KSVTSPDVHELIVSAKEFERRERNQEDVYKGTIKNRKPGDSSHVSHNEAFLHEIIAEEVG
KESFTAVVITGLKAERISYLTEEYPKWTTHLAHVYHYYIHGENGNNLSLPNSDHSNIDIQ
VIMQKKSSRPPCVLNLREVDTDMQTLYINTAADTFEFSISTGLDGGRVEGIIRYHPFLYD
RETYPEDTFTAQEDEDPENEGEVQNTTGKNRDIFECFWNGRLIPYTKISDFSWCTWSAKE
CCGPEECYRRISGVLFTNDKFRVTNNKLTFVDLEQRIKNKNAIFTRVVNKQEQRANIQKD
FKLWLEKCHMEFDKQVKFMGVKEIITRTDVKTKIKQHPWTSFGAIEWDGKTYKKDQLVKS
KKTKPFYYGKVVRFLLFGEYKKDLFATGGAVEICLEPKALHNTNKVILISQIDRTASDND
IKKKIMDDDKKRPHELKVEWPDCEPWCMNDVHPAGTPLGSLKVAILNKNGESLSRMPLSQ
TVIKLSVQLVVVYHVHKTEELVVEFIAQHAERWQYWFKKIEGLTKPGKYTLYLNTIIKDT
RDISYGEEKLPSYSLKFTITEGSAKTFVMDTINTFQQVGVPFNISLKLKDAFGNPGKCPD
LVPELKCSDLKVSHKSVERSGPTLVIRDVTALGKVNYQQSKTYNLEVTLPGLQHHTQALK
ISLKPGPPHSLHVKTEGDHAVVENGNAATFDVEVLDQAGNITTDSKLFVCCTVEGLPLAQ
CDCSCTGAGQIRTKVVEKTLSRGQPQMLEVHFKCSSVNHKNIAQVVKMLKVVPSKRVSLI
KLFSQNDTNLEIKNEDRVEWPAGSSLEKLVYSLFDESGLPVPLTDKVTSEIKVNWTTHLN
VEDLAQGRLPVIQVPTKVSNDFFCHVSCRTVGISFVVVPRPDEPANIRATISQKEVKLGE
TLSGTLTLELVDQYENPTKTLSPSCVTHMTVEAEGLDSSAVSFTWLEDSKSVQVTGLCLQ
AGTPGIRDIRFSYLKHETSVTIKVTAGEPAQLKLVSGPEEPLDVVNDSGISTPFLLQLYD
KWDNVSTDKRVTVELKTSSPALKVKTAAISKPVNSEGRASFSVISLSGPKGPYRLLFRGL
FNNKPITGPSVYLTILPNANKAVKLTVKYDTTAKLPAGGIFPVFTVTVVSDEGRPLMPSA
ALLSMWLWKAQSSETKPSNATELKCSKPLDDERKDCFYFRNKYIPKSAETYSIQFSVLTD
TSNVLFSDKITADVVANQPVRLGPSVPPPVPVISCCTDIASRTLVNDLTLRIVDAHNNPA
GRELSGGVTVSITSSQPNRSVPLFEGTKKRLLLKLEDGEVHVRRLAVVENSPGEDGSAYT
LVFTPVVDSIPSLQSFELAFHFFNDKIHQQKTSGMLRKRDELQTAVDKLKEYIDNSDQLL
QLFNEAFNKANNTAVDLRKSLISKKMEAPESIQDIDQLLSRIRVEAETMQSSSRRLCNIR
DNFKGQQDVVGVVGHLGYVQDDDAARAISWQMKSFMDCVVTRTTESAKRIFDSTDGRQQV
LPLDSIFSSPSRSLPHIRNDRMLFNPTGNPVFARDLLIYPPDNNRSELETVFTNFLKDTL
LIDDLQSGTSYRREMARLKISCPTILTRDGVRVSSMGTFGGTQNRAPPMSQMSVFGAPLP
PQYYALQQQADALSRYRQAVEKRQAVAKKVENQRRKVSSLDMNKKKQDLTEKTKQLEEIK
ALLESTSESRRKRVSTETSQCDASARKRPK
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagacacgctagctgacggtgccgaccgacgcagtcgacggatcctcgtctgc
gactgtcgctcagatgtgctggttacgtctcggatggatgcaacgttttccgactacaat
gactttctctgtgacctaagaaagaaattctctatcaattcaggtcagacgtttgtgctc
accaccacagacagaacagtgttggatttcgacacatttgctgagcttcaggatggttgt
acactgtacttacttctcgaagtcaaccaagttctgccgacggcgatggaggagcaaatc
accttcactccacattataacactataatcaagtgtggcattgatgagtactacaccact
aagggcagggaagcactgccctatgcacttgctgagctcatcgacaacgctttatcagcg
actgtgaacaacaaagacagaaggacagtagagctgagaatgcttttcgacaacactcgt
gggatacctaccattgttgtcttagataacggacatggaatgaattccaagggcctcaat
aactgggctgtgtacaggctgtctaagtttaacaggaaaaacaaccaactggaaagccag
tgtcaggggtatgagcctcctacacccacccgtcgaagtctcaacagtgatatatccttt
tttggagttggaggaaaacaggctgttttcttcttcggagactcagtcaggatgattagt
aaatcagtgacctccccagatgttcacgagctgatcgtgtcagcaaaagagtttgagcga
agagaaagaaaccaagaggacgtttacaagggaaccatcaagaacagaaagccaggcgat
tcttctcacgtgagccacaacgaggcatttctgcatgagataatcgcagaagaagtcgga
aaagaaagcttcacggccgtggtcatcactggactcaaggcggagcgtataagctacctg
acagaggagtaccccaagtggaccactcatcttgctcacgtgtatcactattacatccac
ggagaaaatggaaataatttaagtcttccaaactcagaccactcaaatatcgacattcag
gtcatcatgcagaaaaagagttccagacctccctgtgtgctgaatctcagggaagtggat
acagacatgcagactctgtacatcaatactgctgccgacacatttgagttcagtatcagc
actggactagacggaggcagagtggagggaatcatccgctatcatccttttctgtatgac
agggagacctatcctgaagacacattcactgcgcaagaagatgaagatcctgagaatgag
ggtgaagttcagaacacaacaggaaaaaacagagacatttttgagtgtttctggaatgga
cggctcataccgtacaccaaaatatctgacttcagctggtgtacctggtctgcaaaggag
tgttgtggtcccgaagaatgttaccgccggatttcaggagtgcttttcaccaacgacaaa
ttccgtgtcaccaacaacaagctgacctttgtggacctggagcagaggataaagaacaag
aacgccatcttcactcgtgttgtcaataaacaggaacaaagagccaacattcagaaggat
ttcaaactctggttagagaagtgtcacatggagtttgacaagcaagtcaagttcatgggc
gtcaaagaaatcataacaaggaccgatgtgaaaaccaagattaagcagcacccgtggacg
agctttggtgccatcgaatgggatggaaaaacatacaaaaaggatcagttggtgaagtca
aagaaaacaaaacccttttattatggtaaagtggtgcggtttttgctgtttggagaatac
aagaaagacctcttcgccacaggaggagcagtggagatttgtctggaacccaaagcactg
cacaataccaacaaagtcatcctcatctcccagatcgacagaacagcttctgacaatgac
atcaagaaaaaaatcatggatgacgacaagaagcgtccacatgagttaaaggtggaatgg
ccagactgtgaaccgtggtgtatgaatgatgttcacccagccggcactccactgggaagt
ctcaaagtggcaatcctgaacaaaaatggagagagcttgtcaaggatgccgttaagccag
acggtcatcaaactgagcgtccaactagtggtggtgtaccatgttcataaaacagaggaa
ctcgtggtcgaatttattgcccagcatgcagaaagatggcaatattggttcaagaaaatc
gagggtttgacgaaacctgggaaatacaccttgtatcttaacaccatcataaaggacacc
agagacatcagttatggagaagagaagcttccttcttactccctgaagttcaccatcaca
gagggcagcgctaagacttttgtcatggatacaatcaacacatttcaacaagtcggagtg
cccttcaacatctctctgaagctgaaagatgcttttggaaacccggggaagtgccctgat
ctggtgcctgaactcaagtgcagtgacctgaaagtgagtcacaagtcagtggagaggagc
gggcccaccctcgtcatcagagacgtcacagcattgggaaaagtgaattaccaacagtcc
aagacctacaacctggaggtgaccctgcctggactgcagcaccacacacaggccctgaag
atcagtctgaagcccggtcctccacattccctgcatgtgaagacggaaggcgatcatgcc
gtagttgagaatggaaacgctgcgacatttgacgtcgaagtcctcgaccaggccggaaac
atcaccactgactccaaactctttgtttgttgcacggtggaaggacttcctctagcacag
tgtgactgcagctgcaccggagcaggacagatcaggaccaaagttgtggagaagactttg
agcagggggcaaccacaaatgctcgaagttcactttaagtgttcaagtgttaatcacaaa
aacatcgcccaggtagtaaagatgttgaaagtggtgcccagcaaaagagtgtcactcatt
aaactcttcagtcaaaacgacaccaatctggagatcaagaacgaggacagggtagagtgg
ccggctggaagctctttggagaaactcgtctacagcctttttgatgaatccgggctcccg
gttccactcactgacaaagtcacatctgagatcaaggttaactggaccacgcacttaaac
gtggaggatctggctcaggggaggcttcctgtgatccaggtgccaacaaaggtgtccaat
gacttcttctgccatgtgtcctgcaggaccgttggtatctcttttgtagtcgtacctcgt
ccggacgagccagcgaatatcagagccactatttcccagaaagaagtgaagctgggggag
acgctgagcggaaccctcaccttagaacttgtggaccagtatgagaacccgaccaagact
ctgagtcccagctgtgtgacgcacatgaccgtggaggctgaaggcctggactcgtcggcc
gtgagcttcacgtggctggaggacagtaagtctgtccaggtgacgggactctgtctccag
gctgggacaccgggcatcagagacataagattctcttacttgaagcatgagacgagcgtc
actatcaaagtgacggccggagagccggcacaactcaaactagtcagtggacctgaggag
cccctagatgtggtgaacgactctggtatctccacaccgttcctccttcaactctatgac
aagtgggacaatgtgtccacagacaagcgtgtgacggtggagttaaagacttcttctcca
gcactgaaggtcaagaccgccgctatttcaaagccagtgaattcagagggcagagcctcc
ttcagcgtgatcagcctgagcggaccaaaggggccctatcgactcctctttcgaggttta
ttcaacaacaaacccatcaccgggccctcggtgtatctcaccattctaccaaacgccaac
aaagccgtgaagctgacagtgaagtacgacaccacagccaagctgccagcagggggcata
tttcctgtgttcactgtgactgtggtgtcagatgaaggacgtccattgatgcccagcgct
gctctgttgtccatgtggctgtggaaggcacagtcatcggaaaccaaaccttcaaatgcc
actgagctgaagtgttctaaacccctggatgatgaaagaaaagactgtttttactttaga
aacaaatacatccctaaaagcgctgaaacgtacagcatccagttttctgtcctcacggac
acgtccaacgttctgttcagtgataagatcactgctgacgtcgtggccaatcagccggtc
agactgggacccagcgtcccgcctccagtcccggtgatctcctgctgcacagacattgct
agccgcacgctggtgaacgatctgaccctgaggatcgtggatgctcataacaacccagcg
gggcgagagctgagcggtggggtaactgtttctatcacaagctcccaacccaacagaagt
gtccctctgttcgaggggacgaagaagaggctcctgttgaagctggaggacggagaggtc
cacgtcagacgtttggctgtggtggagaacagccccggtgaggacggcagtgcgtacaca
ctcgtcttcacgccggtcgtagactcgattccttcgttacagagttttgagctcgcgttc
catttttttaacgataaaattcaccagcagaaaacaagtgggatgcttcggaagcgagat
gagctccagactgcagttgataagctgaaagaatacatcgataacagcgaccaactactt
caattgtttaatgaggctttcaacaaagcaaacaacacagcagtggacctccgaaagtct
ttgatcagcaagaaaatggaagcaccagaatcgattcaagacatagaccaactcctgagc
cgaatcagagtggaggctgaaactatgcagagttcctctcgcagactctgcaacatcagg
gacaacttcaagggacagcaggacgttgtgggagtggtaggacacctgggctacgtgcag
gacgatgacgccgccagagccatctcctggcagatgaagagtttcatggattgcgtggtc
accagaaccacagaatcagcgaaaagaatctttgacagcacagacggacggcagcaggtc
ctgcccctggacagcatattttcatcaccatccagaagcctgccacatataagaaatgat
cggatgctctttaatcccactggaaaccccgtcttcgccagagaccttctgatttaccct
cctgataacaatagatcagaacttgaaacagtcttcacaaacttcctcaaagacactctt
ctgattgatgacctgcaatctggcaccagttacaggagagaaatggcgaggctcaagatc
agctgtcccaccatactgaccagggacggcgtcagggtcagttccatgggcacgtttgga
ggaacacagaaccgagctccacccatgagtcagatgtcagtgtttggagctccgctccct
ccacagtactacgctctgcagcaacaagcagacgccctcagccgttaccgacaggctgtg
gagaaaagacaagcagtggccaaaaaggttgagaaccagcgtcggaaagtgtcgtcattg
gacatgaacaagaagaagcaggacctgacggagaaaaccaaacagctggaggagataaaa
gctctgctagaatccacctctgagagtcggaggaaaagagtttcgaccgaaacttctcaa
tgtgatgccagtgcaagaaaaagacctaaataa
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