Cynoglossus semilaevis (tongue sole): 103381239
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Entry
103381239 CDS
T04866
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04115
p53 signaling pathway
csem04145
Phagosome
csem04148
Efferocytosis
csem04350
TGF-beta signaling pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
103381239
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103381239
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
103381239
04148 Efferocytosis
103381239
09143 Cell growth and death
04115 p53 signaling pathway
103381239
09144 Cellular community - eukaryotes
04510 Focal adhesion
103381239
09142 Cell motility
04820 Cytoskeleton in muscle cells
103381239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csem04131
]
103381239
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csem00536
]
103381239
Membrane trafficking [BR:
csem04131
]
Endocytosis
Phagocytosis
Opsonins
103381239
Glycosaminoglycan binding proteins [BR:
csem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103381239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
103381239
NCBI-ProteinID:
XP_016888940
LinkDB
All DBs
Position
7:complement(11776506..11787274)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKLTGIFLLLMLWSCECARVAESRDDNSVYDLFDLIQVPKKNHGVTTVKGDDPYSPAYKI
LDPDLIPPLPETAFRDLIDSIHAERGFLLLLNLKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSVEDVDLATGHWKNITLFVQEDRAVLYAGCEEVNTAELDA
PIHSILTQDTPASAQLRVGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSVTSDTM
ILENLNGSSAIRTTYTGHKTKDLQMVCGFSCEDLTSMFKELKSLGVVVKEVTNELRQLTD
ENKLIRTHIDSHRGVCLHNGIVHKNMDEWTVDDCTECTCQDSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPTPQMGGKDCVGEGRQT
QKCQMPSCPINGNWGPWSPWDTCSLTCGGGVQTRKRLCNNPAAQFGGKECVGEAKDTQMC
NKKSCPVDGCLSNPCFAGAKCSSFPDGSWKCGKCPTGYSGNGIKCKDVNECKEVPDACFE
FNGVHRCENTEPGYNCLPCPSRYSGPQPFGRGVEQAAANKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFIYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGEGDTLFRVPLQLDSDDDRVGDKCDNNQDIDEDGHQN
NLDNCPYIPNANQADHDKDGKGDACDHDDDNDGIPDEKDNCRLAFNPDQLDEDGDGRGDA
CKYDFDQDNVPDIYDVCPENFGISETDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQT
VNCDPGIAVGYHEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWS
NKPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTGDTAGQVRTLWHDPKNVGWKDFTAYR
WHLIHRPRTGHIRVVMYEGKKIMADTGSIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRG
KDSGSVHV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacgggaatatttttgttgctgatgctgtggagctgcgaatgcgcgcgggtt
gcagagagcagggacgacaacagcgtctacgacctgttcgatctcatccaggtccccaag
aagaaccacggagtcaccacggtgaagggagacgacccgtacagccctgcctacaagatc
ctcgacccggacctgatccccccgctccccgagaccgccttcagggacctgattgactcc
atccacgccgagcggggattcctcctgctgctcaatttgaaacagttcaaacgcaccagg
ggaagcctcctgaccgtggagaagcgggacggctccgggcccgtcttcgagatcgtctcc
aacggcaaggccaacactttggacatagttttctccacggagaacaagcagcaggtggtt
tccgtggaggacgtggacctggccacgggtcactggaagaacatcaccctgttcgtgcag
gaggaccgggctgtgctctacgctggatgcgaggaagtgaacacggcggagctggatgcg
cccattcacagcatcctgacgcaggacacaccggccagtgcgcagctgcgggtcggcaaa
ggagcagtgaaggaccggttcatgggggttcttcaaaacgtgcgcttcgtctttgggacc
accctggacgccatcctccggaacaagggatgtcaaagctccgttacctccgacaccatg
atcctggagaacctgaacggatcctccgccatcagaaccacatacaccggacacaaaacc
aaagacctgcagatggtgtgtggcttctcctgtgaggacctgaccagcatgttcaaggag
ctgaagagcctcggtgtggtggtcaaggaggtgaccaacgaactccgacagctgacggac
gagaacaagctgatcaggactcacatcgacagccacaggggcgtctgtctccacaacggc
atcgtccacaagaacatggacgagtggacggtggacgactgcaccgagtgcacgtgtcag
gactctgctactgtgtgccgcaagatctcctgcccactgatcccctgtgccaacgctaca
gttccagacggagagtgctgtccccgctgtggaacaccgagtgactatgcagaggacggc
tggtcgccttggtctgaatggacccattgttccgtgtcgtgtgggcggggcatccagcag
cgcgggcgctcctgcgaccgtatcaataacaactgcgagggcacctcggtgcagacccgc
gactgttacctccaggagtgcgacaaacgcttcaagcaggacggaggctggagccactgg
tccccctggtcgtcctgctccgtcacctgcggctctggtgtcatcacacacatacgcctc
tgcaactcccccacccctcagatgggaggcaaggactgcgtgggcgagggtcggcaaacc
cagaagtgtcagatgccttcctgccccatcaatggaaactgggggccgtggtcaccgtgg
gacacctgcagtctgacctgtggaggcggcgtccagacccgtaaacgtctgtgcaacaac
cccgcagcacagttcggtggcaaagagtgcgtcggtgaagctaaagacactcagatgtgt
aacaagaaaagctgcccagtcgatggttgtctgtccaatccctgcttcgctggagcaaag
tgcagcagttttcctgatggctcctggaaatgtggcaaatgtccaactggctactctggc
aacggaatcaagtgtaaagacgtcaatgagtgcaaggaagttccagatgcttgtttcgag
ttcaacggcgtgcaccgctgtgagaacacagaaccgggctacaactgcctgccctgcccg
tctcgctactcaggaccccagccctttggcagaggagtggagcaggctgctgcgaacaaa
caggtgtgcacgccccgtaatccctgcctcgacggaagccacgactgcaacaaaaacgca
cgctgcaactacctgggacatttctccgaccccatgttccgctgcgagtgcaaacctggc
tacgctggcaacggacacatctgcggagaggacacggacctggacggatggcccaacgct
gacctggtctgcgtggagaacgccacctaccactgcaaaaaggacaactgcccgaacctg
cccaactctggacaagaggactacgacaaggacggcatcggagacgcctgtgacaacgat
gatgacaacgatggaattccagatgaccgggacaactgtccgttcatctacaaccccagg
cagtacgactacgaccgtgatgacgttggcgaccgctgcgataactgcccctacaacagt
aaccccgaccagacggacaccgacaacaacggagagggagacgcctgtgctgtggacatt
gatggagacggtgagggtgacaccttgtttcgtgtcccgctgcagttggattctgacgat
gaccgcgtgggagacaagtgcgacaacaaccaggacattgacgaggacggacatcagaac
aacctggacaactgtccctacatccccaacgccaaccaggccgaccacgacaaggacggc
aaaggtgacgcctgtgaccacgacgacgacaacgacggcatccccgatgaaaaggacaac
tgcagactggccttcaaccccgaccaactggatgaagacggcgacggtcgcggcgatgcc
tgtaaatacgactttgaccaagacaacgtccccgacatctatgacgtgtgtcccgaaaac
tttggcattagtgaaacagacttccgcaagttccaaatggttcctctggaccccaaaggc
acgtcccagattgatcccaattgggtggtgcgtcatcagggcaaagagctggtgcagacg
gtcaactgtgaccctggcatcgctgttgggtaccacgagttcaacgccgtggacttcagt
ggaaccttcttcatcaacacggagcgggacgacgactatgcgggcttcgtgttcgggtac
cagtccagctccaggttctacgtggtgatgtggaagcagattacgcagacgtactggtcc
aataaacccactaaggctcagggttactctggtctgtccattaaagtggtcaactccacc
actggacctggagagcacctccgaaacgccctgtggcacaccggagacacggctggacag
gtccgcactctctggcacgaccctaaaaatgttggatggaaggacttcactgcctacagg
tggcatctgatccacaggccgcgaacaggacacatcagggtggtgatgtatgaaggcaaa
aagatcatggctgatactggaagcatctacgacaagacgtacgcaggcggcaggttaggt
ctctttgtcttctcgcaagagatggtttacttctcagacctgaagtatgaatgcagaggt
aaggattctggctccgttcacgtctga
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