Cynoglossus semilaevis (tongue sole): 103381460
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Entry
103381460 CDS
T04866
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03440
Homologous recombination
csem03460
Fanconi anemia pathway
csem04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103381460 (brca1)
09124 Replication and repair
03440 Homologous recombination
103381460 (brca1)
03460 Fanconi anemia pathway
103381460 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csem01009
]
103381460 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csem04121
]
103381460 (brca1)
03036 Chromosome and associated proteins [BR:
csem03036
]
103381460 (brca1)
03400 DNA repair and recombination proteins [BR:
csem03400
]
103381460 (brca1)
Enzymes [BR:
csem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103381460 (brca1)
Protein phosphatases and associated proteins [BR:
csem01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103381460 (brca1)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103381460 (brca1)
Multi subunit type E3
BRCC complex
103381460 (brca1)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103381460 (brca1)
DNA repair and recombination proteins [BR:
csem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103381460 (brca1)
BRCA1-A complex
103381460 (brca1)
BRCA1-B complex
103381460 (brca1)
BRCA1-C complex
103381460 (brca1)
BRCA complex
103381460 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
103381460 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
RTT107_BRCT_5
zf-Nse
zf-RING_5
zf-ANAPC11
zf-RING_6
zf-RING_10
PTCB-BRCT
zf-PARP
zf-RING_4
zf-rbx1
TRAF3_RING
zf-MIZ
Motif
Other DBs
NCBI-GeneID:
103381460
NCBI-ProteinID:
XP_008312019
LinkDB
All DBs
Position
8:complement(1407755..1445520)
Genome browser
AA seq
1396 aa
AA seq
DB search
MKGPKAADVKKGIAALWETMQCPICLDLFTEPVSTKCDHQFCKFCIIKLLDNSKENKSNC
PVCKNKITKRSLRESSGFQQLVAGLQDMIQGYEHDTGTNYFTGTYMPKKQSSLSDAEAAS
HPPNEVSRDTPVSERAECDDLPMSTLSTLAAQNGFARLMDFEDSSPLTAGNEGLDSGLGE
APPTFEKKLHSSPDNLEQMDPDMIDAMEEATTKTKGKSRSGKSRKASLLEVPKETENQTV
RKSSRKKRKKDLGSDMVNQEKRKKSLQKVAEWLLKVPPEGSSVSEEDNKKDDSDSSSSTS
TIDVHLQISDVKREDRSKALEERVFGAVYKRRKERRRLVCPLPPAGDEALTSVEQKTGSE
DEDQGDSDAMQSVTEGRNDSSSDIFEEAEQMEEVEENDINLCGEKLQDLAEIDENKSIDE
DIVAVSGFKQQQAKQVPKVNMNNTLQHVDSDLQEQAETELETSELKKTDRKKGKNTQSKV
SNPLVLVGVPNAESNSKLSLRSEQVQVQIENYPSSDDQETLIRSTRRSRRLQLFATEVSK
VQRKAKLKINSAEKHHSVENPPEEGKGKTTNKLDSPDKMNIKNMSKRNGCVYDQDLGGIE
LMDANQLSSHPEQEPVAEVPVNTEAPLETRAARDVAVVPTSASPADVTVVQPTFETNKAS
SDLSEVIESGKLVCETECALTENGEKNDSEVDTEQLLQSFKATKRKSFHLGCPDIKRNRP
SDQLIVQDSTSAEEKEEEPSNKHISKTCEIPNKDTLQDDENSLSDDVIPPSNSSILGRKT
TEMPVQGVAEAVMPVPCCWSQGSAAEVVSRSIPSSALTPNKVSKLHKESPHLSVLPQIVD
SRLCYVDVNQTEPHEVLESSHIPNIRCDSPLRDTGKSEESHDSASGEKDQGNTTEHISAA
DSLTPDGLVATETKPSNCDEELQSSSSSINSNPRRKTKKRRIQLLESSSESDCSGSKEEL
PSFSQFLGKASVPVAAAQEQRDTSEGATSEYVCVTPEAAEELRPPPSCPSPDYVDDSQAS
VDLFGTPEQCDVPVNPNSVSMESSEYSSNVLVTQQKIQMQNELVRLEKLMALVSEVLQEK
ESSPAKETNQSYPATGPCCKDTSHDLKKTDVSDADPLASPKDSDDRDVHQPSGSKQDNIS
DMGLSTSTTDPSKAKTFVSSTTKTPKSCAPPSDAREDKENDTPPKDRTKPKLVLVLSGLG
PIEQITVKKFAKSVGGRVVPQVTPEVTHVIMHTDEHLVCQRTLKYFLGIAGRKWVLSFNW
VSECVKQKKLLDERLFEVKGDMVNGPNHQGPTRARTTEDSNLLMRGYKICFHESFTDMAR
DEMEWMAELCGAAVVNDPLLFDQKQKSQQVLIVGSGPTAPSSNNSSLSRRATVVTRGWLL
DTVSTYTLQNYQDYLL
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtccgaaggctgcagatgtcaaaaaggggatagcagcgttgtgggagacaatg
cagtgtcccatatgtttggatttattcacagaaccagtgtctaccaagtgtgaccatcag
ttttgcaaattttgtatcatcaaacttttggataactcaaaagaaaacaagagcaactgt
ccagtttgtaaaaacaagataactaaaaggagtttgcgagaaagctctggttttcagcaa
ctggtagctggactgcaggacatgatccagggatatgaacatgacacagggacaaactac
ttcactggaacttatatgccaaaaaaacaatcaagtctctcagacgccgaggctgcttca
catccccctaatgaggtatctagagatacacctgtctctgaacgtgcagaatgtgatgat
ctccctatgtccaccttgtcaactctagctgctcagaatggatttgcaaggctcatggac
tttgaagactcaagtcctctgacagcaggaaacgaaggtctggacagtggtctcggtgag
gccccacctacctttgagaagaaattgcacagctcaccagataatttggagcaaatggat
cctgacatgatcgatgcaatggaggaggcgacaaccaaaactaaaggtaaaagtaggtca
ggaaaatcaaggaaggcatctctattagaagttccgaaagagactgaaaatcaaaccgta
agaaagtcctcaagaaaaaagaggaaaaaggacttgggatctgacatggttaatcaggag
aaacggaagaaaagtctacagaaagttgcagagtggcttctgaaagttcctcctgaagga
agttcggtgtcggaggaggacaacaagaaggatgactccgacagctcttcttctacttca
acaatagatgtgcacctgcagattagtgacgtgaagagagaggatcgttctaaggccctt
gaagagcgtgtctttggagctgtctacaagagaaggaaggaaagaaggagacttgtctgt
cccttgcctcctgctggtgatgaagcattaacttcagtcgaacagaaaacaggatctgaa
gatgaagatcaaggtgactcagatgcaatgcagtcagtaacagaagggagaaatgactct
agtagtgacatttttgaagaagcagaacagatggaagaagttgaggaaaatgacatcaac
ttgtgcggggaaaagttacaggacttggcagaaattgacgaaaataaaagcatagatgag
gatattgtcgctgtgtctgggtttaaacaacagcaagcaaaacaagttccaaaggttaac
atgaataacaccctgcagcatgttgacagtgatttacaggaacaagctgaaacagagtta
gagacatctgagctcaagaaaacggacagaaaaaaaggtaaaaacactcagtcgaaagtt
tccaatcctctggttttggttggagtgccgaatgcagaatccaattcaaaattgagcttg
aggtcagaacaagttcaggtacaaattgaaaactatcccagtagtgatgaccaagaaacc
ctcattaggagcacaaggagaagcagaagacttcagctattcgcaacagaagtttcaaaa
gttcaaagaaaagcaaagttgaaaattaattccgctgaaaaacaccacagtgttgagaat
ccgccggaggaaggtaaaggtaaaaccaccaataaactggattcgcctgacaagatgaat
ataaaaaatatgtccaaaagaaatggatgtgtttatgatcaagacttaggaggaattgaa
ctcatggacgctaatcagctaagttctcacccagaacaggagcctgttgcagaagttccg
gtgaacaccgaagcccctttagaaaccagggctgcccgtgatgttgctgtggtcccaact
tctgcaagtccagctgatgtaactgtggtgcagccaacattcgaaaccaacaaagcaagc
agtgacttatcagaggttattgagtcggggaaattggtttgtgagactgaatgtgcgctg
actgaaaacggggagaagaacgacagtgaggtggacacggagcaactgcttcagagtttc
aaagccacaaaaaggaaatcgtttcatctcggttgcccagacataaaaagaaatcgcccc
tcggatcaactaattgtgcaagattctacatctgctgaagaaaaagaagaagaaccttca
aacaagcacatttcaaaaacatgtgaaattccaaacaaggacactttacaagatgatgaa
aactcattgtctgatgatgtgattcctccgtctaactcatctatcctgggaagaaaaact
acagagatgccagttcaaggagtggctgaagcagtgatgcctgtcccttgttgttggagc
cagggcagtgcagctgaagttgtctccagaagcattcccagcagtgctctcactcctaat
aaagtgtcaaaacttcacaaggaaagtcctcatctatccgttctgccgcaaatagtggat
tctcgactctgctacgtagacgttaaccagaccgagccacacgaggtgttagagagctct
cacattcctaacattcggtgtgattctccactgagggatactggaaagtcagaggaatca
catgactctgcatctggtgagaaagatcaaggtaacacgactgaacacatctcagctgca
gactctctaacccccgatggtctggtggcaacggaaaccaagccgagcaactgtgacgag
gagttgcagagttctagttcatccataaacagcaacccgaggcggaagacgaagaagagg
aggatccaattgctggagtcttcgtcagagtctgattgcagtggatccaaagaagagctg
ccgagtttttctcagtttctgggaaaggcttctgttccagttgctgcggcccaggagcag
cgtgacaccagtgaaggtgctacaagtgagtatgtgtgtgtcactcctgaggcagcagaa
gagttaagacctccaccttcttgcccgagtccagactatgtcgacgacagtcaagcttct
gtggatctgtttggcacgccagagcaatgtgacgttccagtaaatcccaacagcgtttcc
atggagtcatcagaatattcaagcaacgttcttgtgacccagcaaaagatacaaatgcag
aacgagctggtgaggctggagaagttgatggcgctggtgtcagaggttctccaggagaaa
gagagcagccctgccaaagaaacaaatcaaagctacccagccacagggccctgttgcaag
gacacaagccacgatttaaaaaagacagacgtttcagatgccgatcctttggcgagccca
aaagactctgatgacagagatgtccaccagcccagtgggtcaaagcaagacaacatttca
gacatggggctgagcacatcgaccactgacccctcaaaggcaaagacatttgttagttca
acaaccaaaacaccaaagagctgtgctccaccgtctgatgcacgagaggacaaagagaat
gacacaccccctaaggacaggacaaaacccaaactggtgctggtcctgtctggactagga
cccattgaacagattacggtgaaaaagtttgccaagtctgtcggaggtcgcgtggttcct
caggtgacaccagaggtgactcatgtcataatgcacacagatgaacatctggtctgccag
cgaacgctgaaatacttcctcggcatcgcaggcagaaagtgggtcttgagcttcaactgg
gtgtccgaatgcgtgaaacaaaaaaagctcctggatgagcgtctgtttgaagtgaaaggt
gatatggtgaatggaccaaaccaccagggtcctacaagagcacgtacaactgaggacagt
aatttgctcatgagaggttacaagatctgcttccacgaatcgttcacagacatggccaga
gatgaaatggagtggatggcagagctctgtggagcagcggtagttaacgatccacttctc
tttgaccagaaacagaagtcccagcaggtcctcatcgtaggatccggaccgacagcacca
tcatccaataacagcagtctctccaggcgagccactgttgtgacgcgaggttggctgctg
gacacagtttcaacctacaccctccagaactaccaggactacttactctga
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integrated database retrieval system
