Cynoglossus semilaevis (tongue sole): 103384949
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Entry
103384949 CDS
T04866
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103384949 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csem03019
]
103384949 (tardbp)
Messenger RNA biogenesis [BR:
csem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103384949 (tardbp)
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GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_11
Me-amine-dh_L
RRM_3
Motif
Other DBs
NCBI-GeneID:
103384949
NCBI-ProteinID:
XP_008316882
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Position
10:complement(9925671..9931300)
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AA seq
402 aa
AA seq
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MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPENDWGSLVYVVNYPKGGIVMSSDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLP
WKTTEQDLKDYFSTFGEVIMVQVKRQTNGNSKGFGFVRFADYETQTKVIAQRHMIDGRWC
DCKHPNSKMCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVT
FADDQVAQALCGEDLIIKGISVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGNSRGGLG
SGTSGVNFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTATTTRDQTYSSAS
TSFSSPSSASLGWTAGTTAATNSGFSSGFGTSMESKSSSWGM
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagctctacatccgtgtggctgaggatgaaaacgaggagcccatggagattccc
tcggaggacgatgggactgttttactgtcatcagtagcggctcagtttccaggggcgtgt
ggactgaggtacaggaacccagagtctcagtgcatgaggggggtccggctggtggagggg
gtcctgcacgcacctgagaatgactgggggagtctggtctatgtggtcaattatcccaaa
ggtggtattgtaatgtcctcggataacaaaagaaagatggaggaaatagatgctgcctca
gctgtaaaggtcaagagaggctttcagaaaacatcagatctgattgttcttggactgcca
tggaaaaccactgaacaggacctgaaggattatttcagtacatttggagaggtcatcatg
gtccaggtcaagagacaaacaaacggcaactcaaaaggatttggatttgtccgcttcgct
gactatgagacacagacaaaagtcatcgctcagagacacatgatcgatggacggtggtgt
gactgcaaacatcccaattctaaaatgtgtcctgatgagccaatgcgcagtcgtaaaatt
tttgtcggtcgctgcacagaagacatgacacctgatgaactaagacagtacttcatgcag
tacggtgaagtcaccgacgtcttcatccctaaacctttccgggcctttgcatttgttacg
tttgctgatgatcaggtcgctcaggctctgtgtggagaagacttgatcatcaagggcatc
agtgtgcacatctctaacgcagagcccaaacacaataatagtaggcaaatgatggatcga
gggcgctttggggctggtgggttcagtcagggctatggcaatagtcgtggtgggctgggc
agtgggaccagtggggttaattttggggctctgggtctgaacccagccatggtggctgct
gcccaggcagctctgcagagcagttgggggatgatgggcatgttggccaaccagcagggt
ctgaccacagcagccggcacagccactacaaccagagaccagacctatagttctgccagc
accagtttcagcagccccagctcagccagccttggctggactgcaggcactacagctgcc
accaacagtggctttagctctggctttggcacatctatggagtctaagtcttctagctgg
ggaatgtag
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