KEGG   Cynoglossus semilaevis (tongue sole): 103384949
Entry
103384949         CDS       T04866                                 
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43
  KO
K23600  TAR DNA-binding protein 43
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csem00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103384949 (tardbp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csem03019]
    103384949 (tardbp)
Messenger RNA biogenesis [BR:csem03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103384949 (tardbp)
SSDB
Motif
Pfam: TDP-43_C TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RRM_11 Me-amine-dh_L RRM_3
Other DBs
NCBI-GeneID: 103384949
NCBI-ProteinID: XP_008316882
LinkDB
Position
10:complement(9925671..9931300)
AA seq 402 aa
MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPENDWGSLVYVVNYPKGGIVMSSDNKRKMEEIDAASAVKVKRGFQKTSDLIVLGLP
WKTTEQDLKDYFSTFGEVIMVQVKRQTNGNSKGFGFVRFADYETQTKVIAQRHMIDGRWC
DCKHPNSKMCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVT
FADDQVAQALCGEDLIIKGISVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGNSRGGLG
SGTSGVNFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTATTTRDQTYSSAS
TSFSSPSSASLGWTAGTTAATNSGFSSGFGTSMESKSSSWGM
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgtcggagctctacatccgtgtggctgaggatgaaaacgaggagcccatggagattccc
tcggaggacgatgggactgttttactgtcatcagtagcggctcagtttccaggggcgtgt
ggactgaggtacaggaacccagagtctcagtgcatgaggggggtccggctggtggagggg
gtcctgcacgcacctgagaatgactgggggagtctggtctatgtggtcaattatcccaaa
ggtggtattgtaatgtcctcggataacaaaagaaagatggaggaaatagatgctgcctca
gctgtaaaggtcaagagaggctttcagaaaacatcagatctgattgttcttggactgcca
tggaaaaccactgaacaggacctgaaggattatttcagtacatttggagaggtcatcatg
gtccaggtcaagagacaaacaaacggcaactcaaaaggatttggatttgtccgcttcgct
gactatgagacacagacaaaagtcatcgctcagagacacatgatcgatggacggtggtgt
gactgcaaacatcccaattctaaaatgtgtcctgatgagccaatgcgcagtcgtaaaatt
tttgtcggtcgctgcacagaagacatgacacctgatgaactaagacagtacttcatgcag
tacggtgaagtcaccgacgtcttcatccctaaacctttccgggcctttgcatttgttacg
tttgctgatgatcaggtcgctcaggctctgtgtggagaagacttgatcatcaagggcatc
agtgtgcacatctctaacgcagagcccaaacacaataatagtaggcaaatgatggatcga
gggcgctttggggctggtgggttcagtcagggctatggcaatagtcgtggtgggctgggc
agtgggaccagtggggttaattttggggctctgggtctgaacccagccatggtggctgct
gcccaggcagctctgcagagcagttgggggatgatgggcatgttggccaaccagcagggt
ctgaccacagcagccggcacagccactacaaccagagaccagacctatagttctgccagc
accagtttcagcagccccagctcagccagccttggctggactgcaggcactacagctgcc
accaacagtggctttagctctggctttggcacatctatggagtctaagtcttctagctgg
ggaatgtag

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