Cynoglossus semilaevis (tongue sole): 103398071
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Entry
103398071 CDS
T04866
Symbol
kdm2b
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103398071 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csem03000
]
103398071 (kdm2b)
04121 Ubiquitin system [BR:
csem04121
]
103398071 (kdm2b)
03036 Chromosome and associated proteins [BR:
csem03036
]
103398071 (kdm2b)
Enzymes [BR:
csem01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
103398071 (kdm2b)
Transcription factors [BR:
csem03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
103398071 (kdm2b)
Ubiquitin system [BR:
csem04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103398071 (kdm2b)
Chromosome and associated proteins [BR:
csem03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
103398071 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
103398071 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
103398071
NCBI-ProteinID:
XP_016898371
LinkDB
All DBs
Position
Z:14884639..14896091
Genome browser
AA seq
718 aa
AA seq
DB search
MALSLSGDEEEYDSESEQQRAANRPKPKMGTTSAVKLPSNRTSSGARRRRTRCRRCEACL
RSECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEDEEDK
FNFMLMECSICNEIVHPHCLKMSDASGVVNDELPNCWECPKCNHAGKRGKVLKQKRGPGF
KYASNLPGSLLREQKPVREEGDAASAAKRRPDREETPRVRXXXXXXHRQPPVLSPGALPR
PRPEDKLRKKRKLFEDDDDDDEDLAVRKKSHFRMAVERRGRLMDAEDEGEEHNSRNELLS
ASIRTPVGDSDHSHCSSPQAGPSSEGGSETQEKGQRPKARRKRRPPNHRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFNYLSHQELCVCMRVCKTWNRWC
CDKRLWTKIDLNSTTPLMLSGIIRRQPVFLDLSWTNISKKQLSWLINRLPGLRVLKLSGC
SWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRSKLRNVEDLR
LAGLDITDTSLRLICQQMPNPSRRTRNPGGCSATATTWSAPTNRPVPPRSPPKCVQMERH
VIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFNYLSHQELLTIEFFFFFFLPSVFPPVC
NRVTDHSLNFFKRCGSICQIDLRYCKQVTKTACERFIAEMSVSVPFKLKEDKLLQKAS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagcggagacgaagaggaatatgattcggagtccgagcagcagagg
gcagccaacaggccgaagcccaagatggggacgacgtcggccgtcaagcttccgtccaac
cgcacctcgtctggagcgcggcgcaggaggacgcgctgccgcaggtgcgaggcctgtctc
cgcagtgagtgcggagagtgtcacttctgcaaggacatgaagaagttcggaggtccgggt
cgcatgaagcagtcgtgcattatgaggcagtgcatcgcgcccgtcctgcctcacaccgca
gtgtgtgtggtgtgcaaagaggctggcaaggaggacacactggaggacgaggaggacaag
ttcaacttcatgctgatggagtgttccatctgcaacgagatcgtccacccgcactgtctg
aagatgagcgatgcatcaggagtggtgaacgacgagctgccgaactgctgggagtgtccc
aaatgtaaccacgcgggaaagaggggaaaagtattaaagcaaaaaaggggtccagggttc
aagtacgcctccaacctccccggctccctgctgagggagcagaagcctgtgagagaggag
ggggacgcggcctccgctgccaagaggaggccagacagggaggagacgcccagggtcaga
nnnnnnnnnnnnnnnnnncaccgccagccgcccgtgctgtcccccggcgctctgccccgg
cccagacctgaggacaagctgcggaagaagaggaagttgtttgaggatgatgacgacgac
gacgaagacctcgctgtgaggaaaaagtcccacttcaggatggccgtagagaggaggggg
cgattgatggacgccgaagacgagggagaggaacacaactccaggaacgaactgttgagc
gccagcatcagaactccggttggcgacagtgaccactcccactgcagctcccctcaggcg
gggcccagcagcgagggagggagcgagacccaggaaaagggtcagcgtccgaaggcgcgc
cgcaagcggcgtccgccgaaccatcggcccgtgccgccgcgctcgccgcccaagtgcgtc
caaatggagcgccacgtcattcgccctcccccgatcagcccgcccccggacaggttgccg
ctcaaggacgggaaaactcacgtcatacagcgagaagtttggatgaagatcttcaactac
ctgtcgcaccaggagctgtgtgtgtgtatgagagtctgcaagacatggaacagatggtgt
tgcgataagaggctctggacgaagatagacctgaactccaccacgccgctgatgctcagc
ggcatcatccgccgtcagccggtcttcttggacctcagctggaccaacatttccaagaag
cagctgagttggctcatcaaccgactgccaggtctgagggtgttgaagttgtcgggctgt
tcctgggcggcggtctccgccctctgcacctccagctgccccctgctccgcaccctggac
gtccagtgggtggagggactgaaggacgcccagatgagggacctgctgtcgcctccgacc
gacaacagaccaggacagctggataaccgctctaagctgcggaacgtggaggacctgcga
ctggccgggttggacatcacagacacgtctctgcgtctcatctgtcagcagatgcccaac
ccgagtcggagaacgaggaacccaggaggttgttccgcaacggcaacgacctggagtgcg
ccgaccaatcggcccgtgccgccgcgctcgccgcccaagtgcgtccaaatggagcgccac
gtcattcgccctcccccgatcagcccgcccccggacaggttgccgctcaaggacgggaaa
actcacgtcatacagcgagaagtttggatgaagatcttcaactacctgtcgcaccaggag
ctgttaacgatcgaattttttttcttcttttttcttccttctgttttccctccagtttgt
aaccgggtcacggaccactcgctgaacttttttaagcgctgcggcagcatctgccaaata
gacctacgctactgcaagcaggtgaccaagacggcgtgcgagcgcttcatcgcggagatg
tccgtcagcgtgccgttcaaactgaaagaggacaaactgctgcagaaggctagctaa
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