Comamonas serinivorans: CCO03_13870
Help
Entry
CCO03_13870 CDS
T04892
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cser
Comamonas serinivorans
Pathway
cser03030
DNA replication
cser03410
Base excision repair
cser03420
Nucleotide excision repair
cser03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCO03_13870 (ligA)
03410 Base excision repair
CCO03_13870 (ligA)
03420 Nucleotide excision repair
CCO03_13870 (ligA)
03430 Mismatch repair
CCO03_13870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cser03032
]
CCO03_13870 (ligA)
03400 DNA repair and recombination proteins [BR:
cser03400
]
CCO03_13870 (ligA)
Enzymes [BR:
cser01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCO03_13870 (ligA)
DNA replication proteins [BR:
cser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCO03_13870 (ligA)
DNA repair and recombination proteins [BR:
cser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCO03_13870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCO03_13870 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCO03_13870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCO03_13870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
RUBY_RBDX
ELAPOR1_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ARU05625
UniProt:
A0A1Y0EPQ2
LinkDB
All DBs
Position
complement(3259317..3261461)
Genome browser
AA seq
714 aa
AA seq
DB search
MSDPHTQAPGADLIASKLAEATARALQLRAQLNQWAHQYYVLDQPTVPDAEYDRVFVELQ
TLEGQYPALLTADSPTRRVGGAVLDGFTPVRHRVPMLSIRTETDTSEQGAYTFDARVHRE
LELPEGAPVEGGYVAEPKFDGLAMSLRYEHGVLVQAATRGDGETGEDVTQNIRTIGQIPL
RLQGANVPPVVEVRGEVYMRRDDFERLNERQRERIAQGAKNERTFVNPRNAAAGAVRQLD
PGIARQRPLSFFAYGLGEVSPPANGGPVFATQWDMLQQLRAWGFPVSELVRAVPDAAGLV
AFHADVAGQRDRLAFDIDGVVYKVNALALQRRLGFVSREPRWAVAHKYPAQEMMTTVLAI
DIQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEVLRKDVRIGDTVIVRRAGDVIPEV
VSTLVDKRVAGALPFQMPHQCPICGAEAVREPGEADWRCSGGISCPAQRKEAIKHFAHRR
AMDVEGLGDKLVEQLVDAGLVNTLPDLYRLGLSALANLERMGTRSAQNLVDALDKSKQAT
LPRFLFGLGVRHVGETTAKDLARHFGSLDAVMDASVAQLLDVPDVGPIVAESVHTFFAQP
HNREVVAQLRACGVRWDESSGDAGAPKPLVGKTFVLTGTFPTLSRDQAKDMLEAAGAKVS
GSVSKKTDYVVAGAEAGSKLTKAQDLGVTILDEDAMLALIAAGVAAADDGGAQA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatccacacacccaggcgcctggcgcagacctgatcgccagcaaactggccgag
gccaccgcgcgcgcgctgcagctgcgcgcccagctcaaccagtgggcccatcagtattac
gtgctcgatcagcccacggttcctgatgcggagtatgaccgtgtcttcgttgaactgcag
acgctggaagggcaataccccgctttgctgacggctgactcgccgacgcggcgcgtgggc
ggcgccgtgctcgacggcttcacgccggtgcgccaccgcgtgcccatgctcagcatccgc
accgaaaccgacaccagcgagcagggcgcctacaccttcgacgcgcgcgtgcaccgcgag
ctggagctgcccgagggcgcgccggtcgagggcggctacgtcgccgagcccaagttcgac
ggcctggccatgagcctgcgctacgagcacggcgtgctggtgcaggccgccacgcgcggc
gatggcgaaaccggtgaagacgtgacgcagaacatccgcaccatcggccagattccgctg
cgtctgcagggtgcgaacgtgccgccggtggtcgaggtgcgcggcgaggtctacatgcgc
cgcgacgatttcgagcgcctgaacgaacgccagcgcgagcgcatcgcccagggggccaag
aacgagcgcaccttcgtcaacccgcgcaacgcggcggctggcgccgtgcgccagctggac
cccggcatcgcgcgccagcggccgctgagctttttcgcctatggcctgggcgaggtctcg
ccgcccgccaacggcggcccggtgttcgccacgcaatgggacatgctgcagcagttgcgg
gcctggggcttcccggtgtccgagctggtgcgggccgtgcccgatgcggctggcctggtg
gcctttcacgccgacgtggccggccagcgcgaccgcctcgcgttcgacatcgacggcgtg
gtctacaaagtcaacgcgctggcgctgcagcgccggctgggcttcgtcagccgcgaaccc
cgctgggccgtggcgcacaagtacccggcgcaggagatgatgaccacggtgctggccatc
gacatccaggtcggccgcaccggcaagctcacgcccgtggccaagctggcgccggtgttc
gtcggcggcgtcaccgtcaccaacgccaccctgcacaacgaggacgaggtgctgcgcaag
gacgtgcgcatcggcgacaccgtcatcgtgcgccgcgcgggcgacgtgatccccgaggtc
gtcagcaccctggtggacaagcgcgtggccggtgcgctgccgttccagatgccgcaccag
tgccccatctgcggcgccgaggccgtgcgcgagcccggcgaggccgactggcgctgcagc
ggcggcatctcgtgcccggcgcagcgcaaggaggccatcaagcatttcgcccaccgccgc
gccatggacgtggaaggcctgggcgacaagctcgtcgaacagctggtggacgcgggcctg
gtcaacaccttgcccgacctgtaccgcctgggcctgagcgcgctggccaacctggagcgc
atgggcacgcgctcggcgcagaacctggtcgatgcgctggacaagtccaaacaggcgacg
ctgccgcgctttctgttcggcctgggcgtgcgccacgtgggcgagaccacggccaaggac
ctggcgcgccatttcggcagcctggatgccgtgatggacgccagcgtggcgcagctgctg
gacgtgccggacgtcgggcccatcgtggccgagagcgtgcacacctttttcgcccagccg
cacaaccgcgaggtggtggcgcagctgcgcgcctgcggggtgcgctgggacgagtcgagc
ggcgatgccggcgcgcccaagccgctggtcggcaagacctttgtgctgaccggcaccttc
cccaccctgagccgcgaccaggccaaggacatgctggaagccgcgggcgccaaggtgtcg
ggctcggtcagcaagaagaccgactacgtggtcgccggcgccgaagccggcagcaagctg
accaaggcccaggacctgggcgtgaccatcctggacgaagacgccatgctggcgctgatc
gccgcgggtgtggctgcggccgatgacggcggagcccaggcatga
DBGET
integrated database retrieval system
