Clostridium saccharolyticum WM1: Closa_1111
Help
Entry
Closa_1111 CDS
T01288
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03030
DNA replication
csh03410
Base excision repair
csh03420
Nucleotide excision repair
csh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Closa_1111
03410 Base excision repair
Closa_1111
03420 Nucleotide excision repair
Closa_1111
03430 Mismatch repair
Closa_1111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csh03032
]
Closa_1111
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_1111
Enzymes [BR:
csh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Closa_1111
DNA replication proteins [BR:
csh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Closa_1111
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Closa_1111
NER (nucleotide excision repair)
GGR (global genome repair) factors
Closa_1111
MMR (mismatch excision repair)
DNA ligase
Closa_1111
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Closa_1111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
HHH_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADL03727
UniProt:
D9R7J8
LinkDB
All DBs
Position
1209739..1211757
Genome browser
AA seq
672 aa
AA seq
DB search
MDANIYEKQRDLTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQTGIHMANSPTQ
TVGYPVMSKLEKTIHEIPLLSLEKTKSSEDLELFQGKHQVMLMLKLDGLTVKLTYENGRL
VEVATRGDGDEGEIITHNTRGITGIPVQIPYSGRLVVTGEAFIRPVDFEILKIKLLDSTG
RPYKNGRNLAAGSVRLLDAVACRDRKVVFMPFGVLEGYPDMTTKSQKLSQLPALGFSICK
FLVSKRPLTLAEIEQAIQQLQQFAKANGIPIDGIVMSYNDIAFSKSCGRTGHHYKDGMAF
KFEDELYESRLLHIEWNTTRSGEIAPVAVFDTVEIDGCEVSRASLHNLTFIESLELMPGN
RILVSKRNMIIPHIEDNLDRGGFLLGSVIPHECPCCGQSTRIHVGEERSVEGEVRTTKTL
FCDNPDCETRRLRRFVHFVSQKAMDIAGLSEATLEKLIGRGWIHTYMDIYRLDRHRGEIV
RMDGFGEKSWQNLWDAIQQSRNTTFERYVIAMDIPMIGNSASKALRKEFNGSLSDFEMAV
YQGYDFTQLPDFGETLHNNIRDWFSLEENIYSWDELQKLLCIEKKLAETVPSDEDSAFVG
CTIVVTGKVEPYTREGINDLIESLGAHPGNSVSSKTDYLVCGEKAGGKLMKARELGIPVL
TPAEFFQRANVG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggacgcaaatatttatgaaaaacagagggatctgacagaacggctgaacatctaccgg
gaacaatattatgaccataatgctcccagtgtgtcagatgaaatttatgaccgtctgttc
gacaaattgaaagaattggagcaacagaccggcatccacatggcaaattctccgacacag
acggtaggttatcctgtgatgagcaagttagaaaagaccatccatgaaatccccttgctg
tctttggaaaaaacaaaaagcagtgaagatttggaattgttccaaggaaagcatcaggtc
atgcttatgctgaagctggacggcctcaccgtaaagctgacctatgaaaatggtcggctt
gtagaagtagctaccagaggcgacggcgatgagggagaaattattacccacaatacaaga
gggattaccggaatcccggtacaaattccctatagcggtcggctggtggtgactggcgag
gcatttattcgccccgttgattttgaaatcctaaagattaaactactggacagcaccgga
agaccctataaaaatggcaggaatctggctgccggttcggtgcgtctgctggatgcggtc
gcctgccgggatcgaaaggttgtatttatgccttttggtgtgttagaaggttatcccgac
atgacaacgaaatctcaaaagctgtctcagctcccggcactgggcttttctatctgcaaa
tttttagtcagtaagaggccgcttaccctggctgaaattgaacaggcaattcaacagcta
caacagtttgccaaagcaaatggtattcccatcgacggaatcgtgatgtcttataacgat
attgccttctctaaaagctgtggacgcacaggtcatcattataaggacggcatggctttt
aagtttgaagatgagctttatgaaagccgtttgctacacatagaatggaacactactcga
tctggtgagattgccccagtggcggtatttgataccgtagagatagacggttgcgaggtg
tccagagccagcctgcataatttgacttttattgagagtctggaactgatgccaggaaac
cggattttggtcagcaaacgcaatatgatcattccccacattgaggataatttagaccgc
ggcggatttttactgggaagtgtgattccccatgagtgcccttgctgcggtcagtctacc
cgcatccatgtgggagaggaacgtagcgtggagggcgaagtgcggacaacaaagacccta
ttctgtgataatccagactgcgagacgcggcgactgcggaggttcgttcattttgtcagc
cagaaagcgatggacattgccgggctgtccgaggccacactggagaaattgattggccgt
ggctggatacacacttacatggacatctaccgtctggacagacaccggggtgagattgtg
cggatggatggctttggggaaaagtcatggcaaaatctttgggatgccatccagcaaagc
aggaatacaacctttgagcgatatgtaatcgctatggatatccccatgattggcaacagt
gccagcaaagccttgcgtaaggaattcaatggcagtctttccgattttgaaatggccgta
tatcagggatatgattttacacagcttcccgatttcggagaaacgcttcacaacaatatt
cgggattggttcagtctggaagagaatatttatagctgggatgagctgcaaaagctgctg
tgcattgaaaaaaagctggcggaaacggtcccaagtgatgaagattctgcatttgtgggc
tgtaccattgtggtaaccggaaaagtagagccttacaccagagagggcatcaacgattta
atcgaatctctgggtgcccatcccggcaattccgtttcctcaaaaacggattacctggtc
tgcggcgaaaaggctggcggtaagttgatgaaagcacgggaactgggtattccagtcctg
acgccggcagagttcttccagagggcaaatgttggctaa
DBGET
integrated database retrieval system
