Camellia sinensis (tea plant): 114290536
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Entry
114290536 CDS
T07364
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
114290536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114290536
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
114290536
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
114290536
NCBI-ProteinID:
XP_028090274
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MGIPAFYRWLVDKYPLAVADVIEEAPIIVNGVSMPLDSSRPNPNDIEFDNLYLDMNGIIH
PCFHPEGLPAPKTYEEVFEAVFKYIDRVFSIVRPRKLLYMAIDGVAPRAKMNQQRARRFR
AAKDAADEASRTEGLSGVHGAEGEDLALLEQTKKLDSNVITPGTEFMSLLSSALQYYVHL
RMNMDPGWRGVKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEIHFSILREDVRKENTNDNSRRDRKKMSRQKQREESEQGGSGKYIQDYSMRLKFQF
LHVWILRDYLVHDLRIPDPTAKADLERLIDDFVFMCLFVGNDFLPHVPSLEISEGAIDLL
MVVYKKEFIQMGGYLTNSVEVNLERVEHFVQAVGCHEDAIFRKRSQVQKEREIWFRRSSR
PVLEETKTWSQHGRSSRSCVKKMQSSVNWATDDANPVIDQVKLGEEGWKERFYAEKFEAK
TDDDREKIRRHSVLKYIEGICWVMHYYYEGVCSWQWFYPYHYAPFASDFYGLDQLEIYFT
LGKPFKPFDQLMGVLPAASAHALPFFYRKLMTDSSSPILDFYPDDFELDMDGKRFAWQAI
CKLPFIKESRLLSEIVKVEHTLTDEEKRRNGLGMDVLFIHKSHSLALKIFSFYEKNKDHP
KLLEAKVKRKIDPELSGGMNGYIYISDKPVCPLEINPPIGDMAMIMKNEVLSVFYKYPSF
HSHIPKPPEGVTVPEKAVKKRDVLPSPVLWHEKSSLLGRIVPKRPPIPESVSGHSLAKLA
HQLVCKYYLAKQPVSHGYMKVGNHGGVDDPTCQSNLKATVCGKELDGGSENCITTESRKR
KRNRGSRRSNKLGNQIGVDDPTCQSNLKATVCGKELDGGSENCTAIDSKKRKRNRDRRLR
RIKKRKLMSTTNIEVKRELNGGSNNGSLTNLEVKGEEFNGEEVGNHIGVDGPSCQSNLKA
TVCGKELDRGSENCIIAESRKRKRKRGSRRRNKLGNQIGVDDPTCQLNLKATVCGKELDG
EVENNHVGVVDPTCQSNMKATVCGKELDGEVKNNHVGVDDPTCQSNLKATVCGKELDGEV
ENNHVGVDDRTCQSNMKATVCGKELDGEVKNNHVGVDDLTCQSNLKATVCGKELDGGIEN
CTAMILKTSYRTEITDFA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggggatacctgcattctatcgttggctggtcgataaatacccacttgctgtcgccgac
gtcatcgaagaagctccgatcatcgtcaatggcgtttcaatgcccctagattcaagtcga
ccaaaccccaatgacattgaattcgacaatctttaccttgatatgaatggaatcatccat
ccctgtttccaccctgaaggcctccctgctccgaagacgtatgaggaggtattcgaggca
gtgttcaagtacatagatcgagttttctcgatcgttagacctcgaaaactactttatatg
gcaattgatggtgttgcaccacgtgctaagatgaatcaacaacgagcaagacgtttcaga
gctgctaaggatgcagctgatgaagcctctagaacagaggggctgagtggagttcatgga
gcagaaggggaagacttggctcttttggagcaaactaaaaagctggattcaaatgttatt
acacctggaactgaattcatgtcattactgtcatcagctcttcaatattatgtacacttg
aggatgaatatggatcctgggtggaggggagtcaaggtaattctctctgatgccaatgtg
cctggtgagggggagcataagataatgtcttacatccgcttacaaagaaatcttccagga
tttgatccaaacacgaggcattgtttgtatggattggatgcagatttgatcatgcttgca
ttggctacccatgaaatccatttctcaattctaagagaggatgtccgcaaagaaaacaca
aatgataatagtcgaagagataggaagaagatgagtagacagaaacaaagggaggagtcg
gagcaggggggttctggcaagtacatacaagactattccatgaggctgaaatttcagttt
ctacatgtatggatactcagagactatctagtccatgacttaagaataccagatccaaca
gcaaaggcagacttggaacgtttaattgatgattttgtcttcatgtgcttgtttgttgga
aatgactttctacctcatgtgccatcattggagatatctgagggggctattgatctacta
atggttgtctacaagaaggaatttattcaaatgggtggctatctgactaattctgttgag
gtaaatttggaacgcgtggagcactttgtacaagctgttggttgtcatgaggatgcaatt
ttcaggaaacgtagccaggtgcaaaaagaaagggagatttggtttcgacgttcttcaaga
cctgtgctcgaagaaacgaagacttggtctcaacatggacgttctagtcgttcctgtgtt
aagaagatgcaaagctcagtaaactgggcaactgatgatgcaaatcctgtaatcgaccag
gttaaactaggagaagagggatggaaggagagattctatgctgaaaagtttgaggctaaa
acagatgatgatcgtgagaaaattcgtagacattcggtcctgaaatacatagaagggatt
tgttgggtcatgcattattactacgaaggagtatgctcttggcaatggttctatccttac
cattacgccccatttgcttcagatttttatggtcttgatcagttggaaatttacttcacc
cttgggaagccctttaagccatttgatcagttaatgggtgtattgcctgctgcgagtgca
catgcacttcctttcttttacaggaaattgatgacagattcatcatcacctattttggac
ttctatcctgatgattttgagttggacatggatggaaaacgttttgcttggcaggctatt
tgcaaattaccatttattaaggagtcccgccttctctcagaaattgtaaaggtggagcac
acattgacggatgaagaaaaacgaagaaacggtttgggcatggatgtactctttattcac
aaatctcattctttagcattgaagatcttttctttctatgagaaaaataaagatcatcca
aagttgctcgaggctaaagtcaaacgaaagatcgaccctgaactaagcggtgggatgaat
ggatacatttatatttctgataaacctgtgtgtcctctggagatcaatccaccgattggt
gacatggcgatgattatgaagaacgaagtcctatctgtcttctacaaatacccttcattt
cattctcacatcccaaaaccaccagaaggagtgactgtgcctgagaaggctgtcaaaaag
cgagatgtcctaccttcacctgttctatggcatgagaaatcgtcccttcttggacgcata
gttcctaaaaggccacccatccccgagtctgtctctggtcattctcttgcaaaactggct
catcagcttgtttgtaagtattatcttgcaaagcaaccagtaagccatggatacatgaaa
gttggcaaccatggaggtgtggatgacccgacttgccaatcaaacttgaaggctacagtt
tgtgggaaggaactggatggaggcagtgaaaactgcattactactgaatctagaaaaagg
aaacggaatagaggtagtcgtcggagtaataaactcggcaaccaaataggtgtggatgac
ccgacttgccagtcaaacttgaaagcaacagtttgtgggaaggaactagatggaggcagt
gaaaactgcactgctattgattctaaaaaaaggaaacggaacagagatcgccgacttcgc
cgaatcaaaaagcgaaagttaatgtcgacgacaaatatagaagtaaaaagagaacttaat
ggtggctcaaataatggatcattgacaaatttagaagtaaaaggagaagaatttaatggt
gaagaagttggcaaccatataggtgtagatggcccgagttgccaatcaaacttgaaagca
acagtttgtgggaaggaactggatagaggcagtgaaaactgcattattgctgaatctaga
aaaaggaaacggaaaagaggtagtcgtcgccgtaataaactgggcaaccaaataggtgtg
gatgatccaacttgtcagttgaacttgaaagcaacagtttgtgggaaggaactagatgga
gaagttgaaaacaaccatgtaggtgtggttgacccgacttgtcagtcaaacatgaaagca
acagtttgtgggaaggaactagatggagaagtcaaaaacaaccatgtaggtgtggatgac
ccgacttgccagtcaaacttgaaagcaacggtttgtgggaaggaactagatggagaagtt
gaaaacaaccatgtaggtgtggatgaccggacttgtcagtcaaacatgaaagcaacggtt
tgtgggaaggaactagatggagaagtcaaaaacaaccatgtaggtgtggatgacctgact
tgccagtcaaacttgaaagcaacggtttgtgggaaggaactagatggaggcattgaaaac
tgcactgctatgattctaaaaacaagttacagaacagaaatcaccgacttcgcctaa
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