Entry |
|
Name |
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
|
KO |
K20553 | 5'-3' exoribonuclease 4 [EC:3.1.13.-] |
|
Organism |
csin Camellia sinensis (tea plant)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:csin00001]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
114312772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csin03019]
114312772
Messenger RNA biogenesis [BR:csin03019]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
114312772
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
948 aa
MGVPAFYKWLADRYPQSISDVVEEEPRELVNGVFFPVDISKPNPNGMEFDNMYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAAAAEAEEERLRKEFEAEGRNLTHKEKAETSDTNVITPGTQFMAVLSVALQYYI
QSRLNHNPGWWSTKVILSDANVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIM
LSLATHEVHFSILREVITFPGQQEKCFLCGEAGHLAAECRGRPGGQDTVNGKVVDNTPIH
KKKYQFLNIWVLREYLQYDLEIPNPPFEINFERLVDDFVFLCFFVGNDFLPHMPTLEIRE
GAINLLMSVYRKEFAAIGGYLTDAGEVLLDRVEHFIQSVAVFEDQIFQKRSRIQQAMENN
EEMKLRARKEVSQEPPVPVVDKVKLGEPGYKERYYAEKFDESDPEKIDEIRKDAVLRYVE
GLCWVCQYYYHGVCSWLWFYPYHYAPFASDLNGLTDLEITFFPGEPFKPFDQLMGTLPAT
SSSALPEEYRRLMTDPASPIQEFYPSDFEIDMNGKRFAWQGIAKLPFINEKKLVAETKKL
KDTLTEQEQFRNSVMHDLLYVHYSHPLAAQIMSYYHFFCQLPPDQRYPWPINTNLSGGMN
GHLWLCGRSGWRNVVVSPVRGLQDIEYNQILNTTYLNPAHHKHIAEPPAGIHMPGKILSP
LDIKPFPLLWHEDNGGRRQQNRDRPPILGSISGPRLGEAAHRLLKNTLNLKPNHNNYSES
FQQTPYRNSQSNHVIINRPRAAGPSGYGRGFIDNSSPYYGNYNNPRAITGPPRSAPSQYE
FQGNRQNIKAQDRYSRAGMSALTIDEVRTRPQAMMSLMTPNSGQLQNNGNQFVQNMASLP
SPPPKWINRPPSSSGMYYDQQQKSTASTYEAQVKKVYQVKGLAPPESV |
NT seq |
2847 nt +upstreamnt +downstreamnt
atgggagtgccggcgttctacaagtggctggcggatcggtaccctcagtcgatctccgac
gtggtcgaggaagagcccagggagctcgtcaacggcgtcttcttccccgtcgatatctcc
aaacctaaccctaacggcatggagtttgataacatgtacctcgacatgaatggaattatc
cacccctgttttcatcccgaaggcaagcctgcacctgccacttatgatgatgtatttaaa
tcaatatttgattacattgaccatctattctcattggttcgcccaagaaagcttctttat
atggcaattgatggggttgctccgagagccaaaatgaatcaacaacgttcccggcgcttt
agagcagcaaaggatgctgctgcagcagctgaagctgaggaagaaagattgagaaaagag
tttgaagctgaggggagaaatctgactcacaaagaaaaggctgaaacatctgacacaaat
gtcataactcctggcactcaatttatggcagtgctctcagttgcacttcaatattatata
cagtctaggttgaatcacaaccctggttggtggagtacaaaggtcattctttctgatgca
aatgttcctggtgagggtgaacacaaaatcatgtcttatattcgcctacagcgtaacctt
cctggtttcaatccgaatactcggcattgtttatatggcctggatgcagaccttattatg
ctttctttagcaactcatgaagttcacttctcaatattaagggaggttatcacttttcct
ggacagcaagaaaaatgtttcctttgtggtgaagctggtcatctggctgctgagtgtcgt
ggtaggccgggtggccaagacactgttaatgggaaggtggtggacaacacaccgattcac
aagaagaaatatcagttcctcaacatctgggtgttgcgagaatatttgcaatatgatttg
gagattcccaaccctccttttgagattaactttgagcgattggtggatgactttgtgttt
ctgtgtttctttgttggcaatgactttctcccacatatgccgacattggaaattcgtgag
ggtgctattaatctattgatgtctgtctatagaaaggagtttgctgctataggtggttat
cttactgatgcgggtgaggttttactggacagagtggaacattttatccagtcagttgca
gtctttgaggaccaaatctttcagaagcggtctcgtatacagcaggctatggagaataat
gaagaaatgaagcttagagcaagaaaagaggtttctcaggagccaccagtaccagttgtg
gacaaggtgaaattaggtgagcctggatataaagaaaggtattatgccgagaaatttgat
gaatcagacccagaaaaaattgatgaaattagaaaggatgcagttttgaggtatgtagaa
ggtttatgctgggtttgccagtactactaccatggtgtctgctcatggctatggttttat
ccatatcattatgctccatttgcttccgatctaaatggtctaactgatttagaaataaca
tttttcccgggagagccttttaagcctttcgaccagctaatgggaaccttgcctgctaca
agttctagtgctctgcctgaagagtacaggagattgatgactgatccagcatcaccgatc
caagaattctacccttctgattttgagattgatatgaatggcaagcgctttgcatggcag
ggcattgccaaattgcctttcatcaatgagaagaaattggtcgctgaaacaaagaaactg
aaggacactctgacggagcaagaacaatttcggaatagtgtgatgcatgatttgctatat
gtgcattattctcatcctttggctgcccaaattatgtcatactaccattttttttgtcag
ttacccccagatcaaagatacccttggccaattaacacaaatcttagtggaggaatgaat
gggcatctttggttatgtggaaggagtgggtggaggaatgtggttgtgtcccctgtcagg
ggattgcaagatattgagtataaccaaattttaaatactacctatctgaatcctgcacac
cataaacacatcgccgaacctcccgcaggcatacacatgcctggaaagattttaagtcct
ttggacataaaacccttccctttgttatggcatgaagataatggtggccggcgccagcaa
aacagagataggccacccatactggggtcaatatctggtcctcggttgggagaagcagcg
catcgtttgcttaagaacactctgaatctgaaacccaatcacaacaattattctgaatca
tttcaacaaactccatataggaattcccaaagcaaccatgtaataattaatagaccaaga
gcagctggaccctccgggtatggaaggggattcattgacaattcaagtccctactatgga
aattataataatccccgagccataacaggtcctcctagatctgcgccttctcagtatgaa
ttccaaggcaacagacagaatatcaaggcacaagatagatactcaagggctgggatgtct
gctttgacaattgatgaagtcagaaccaggccacaagcaatgatgtctctgatgacgcca
aattcaggacaattgcaaaataatgggaaccagtttgtgcaaaacatggcttcacttcca
tcaccacctcccaagtggatcaatagaccgcctagtagttctggaatgtactatgaccaa
caacagaagtcaacagcttcaacatatgaagctcaagtgaagaaagtttatcaagtgaag
ggtctggcgcccccagaatctgtctga |