Cronobacter sakazakii ES15: ES15_0059
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Entry
ES15_0059 CDS
T02119
Symbol
ligA1
Name
(GenBank) putative NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csk
Cronobacter sakazakii ES15
Pathway
csk03030
DNA replication
csk03410
Base excision repair
csk03420
Nucleotide excision repair
csk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ES15_0059 (ligA1)
03410 Base excision repair
ES15_0059 (ligA1)
03420 Nucleotide excision repair
ES15_0059 (ligA1)
03430 Mismatch repair
ES15_0059 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csk03032
]
ES15_0059 (ligA1)
03400 DNA repair and recombination proteins [BR:
csk03400
]
ES15_0059 (ligA1)
Enzymes [BR:
csk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ES15_0059 (ligA1)
DNA replication proteins [BR:
csk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ES15_0059 (ligA1)
DNA repair and recombination proteins [BR:
csk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ES15_0059 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ES15_0059 (ligA1)
MMR (mismatch excision repair)
DNA ligase
ES15_0059 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ES15_0059 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
DUF3701
RNA_ligase
HHH
Glyco_hydro_114
Motif
Other DBs
NCBI-ProteinID:
AFJ97632
LinkDB
All DBs
Position
72324..74009
Genome browser
AA seq
561 aa
AA seq
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MRITIFLLLIILASAGAYAACPDWTPQQAQQEVSALENQLTRWDEAYWLHGENKVSDAVY
DSMRQRLRAWQTCFALPVVNDAPVALAAGRTRHPVAHTGVQKLKDATSLSQWMHGKTDLW
VQPKVDGVAVSLVYRKGKLQQVISRGDGERGEDWTARARHIPAIPLQVTGELADCVLQGE
LFLRQTGHRQQQDGGINARGQVAGAMMRSTVSSVLNDLDLFIWAWPDGPKAMEARLSALA
QGGFPLARAWSKSVHSVSEVTRLREQWFSEPLPFVTDGVVIREGREPPGKSWRPGEGSWV
VAWKYPPAKQITEIKELRFAVGRTGKISVVAQLEPVTLDDKKVSKVSIGSLARWEKLDLA
EGDQVEISLAGQGIPRLDAVIWRPTQRIKPVPPTARFDTLSCLYVTTGCEEQFISRLVWL
SGKPVFDLAGMGEATWRQLSEHHHFEHLFSWLALSVDALKQTPGFSAQRAAQLWHQFNLT
RQQPFQRWVKALGLPLPARAWQALTDSKWHQLQARDERSWQTLPGVGAERARQLVSYIHH
PDIAALAEWLAAQRIDGFALP
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtattacgattttcttactgcttatcattctggcatccgcaggcgcttatgcggcc
tgtcctgactggacgccgcagcaggcacaacaggaggtctcggcgctggaaaaccagctg
acgcgctgggatgaagcgtactggctgcatggcgaaaataaggtcagcgacgcggtatat
gacagcatgcgtcaaaggcttcgtgcatggcagacctgttttgcgctgccagtagtcaac
gacgcgccagtggcgcttgcagcaggacgcacgcgccatcctgtcgcgcatactggtgtg
caaaagctcaaagatgccacctcactttcgcaatggatgcacggcaaaacggatctatgg
gtacaaccaaaggtagatggtgtggcggtttcgctggtgtaccggaaaggcaaactgcaa
caggttatcagtcgtggcgacggcgagcggggcgaggactggacggcgcgggcccgacat
attccggcaatacctttgcaggtaacaggtgagctggctgactgcgtgttacagggcgag
cttttcctgcgccagacagggcatcgtcagcagcaggatggtggcatcaacgcacgaggg
caggtggcgggggcaatgatgcgtagtacggtgtcatcagtgctaaacgatctggatctg
tttatctgggcgtggccggatggcccgaaagcgatggaggcgcggttgtccgcgctggcg
cagggcggatttccgttagcgcgcgcctggagtaagtcggtacattcagtttcagaagtc
acgcgcctgcgtgagcaatggttcagcgagccgctgccctttgtgaccgatggtgtcgta
attcgcgaaggcagggagccgcccggaaaaagctggcgtccgggcgaaggctcatgggtt
gtggcatggaaatatccgcctgcgaaacagataacagaaattaaagagctacgttttgct
gttggtcggaccggaaaaataagcgttgtggctcaactggagccggtaacgcttgatgat
aaaaaggtgtctaaagtgagtataggttcgctggcgcgctgggaaaaactcgatctggct
gaaggcgatcaggtggaaatcagtcttgctggtcagggaattccacggctggatgcggtt
atctggcggccaacgcagcgtattaagccagtgccgccaaccgcacgcttcgatacgctg
agctgtctgtatgtcactaccggttgcgaagagcagtttatttcacgtctggtctggctt
agcggaaagcccgtatttgatctcgcgggcatgggtgaagcaacgtggcgtcagttatca
gagcaccatcattttgagcatctcttttcctggcttgcgctcagcgttgatgccttaaaa
caaacaccgggttttagcgcgcagcgcgcggcacagctctggcatcagttcaacctgacc
cgtcagcagccttttcagcgctgggtaaaagcgcttgggttacctttacccgcgcgggcc
tggcaggcgctgacagatagcaaatggcatcagctacaggcacgtgatgagcgaagctgg
cagacgcttcctggtgttggtgccgaacgtgcgcgccagcttgtcagttatatccaccac
ccggatatcgctgcgctggccgaatggctggcagctcagcgaattgacggcttcgcgttg
ccataa
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