Coccomyxa subellipsoidea: COCSUDRAFT_31176
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Entry
COCSUDRAFT_31176 CDS
T02914
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSUDRAFT_31176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csl03019
]
COCSUDRAFT_31176
Messenger RNA biogenesis [BR:
csl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCSUDRAFT_31176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_25
AAA_29
AAA_28
nSTAND3
TsaE
PduV-EutP
AAA_16
AAA_23
AAA
AAA_15
NACHT
AAA_22
Arf
DLIC
AAA_5
ATP-synt_ab
SRP54
Zeta_toxin
AAA_33
FlhE
ORC-CDC6-like
AAA_24
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
17037233
NCBI-ProteinID:
XP_005643837
JGI:
31176
UniProt:
I0YLM4
LinkDB
All DBs
AA seq
315 aa
AA seq
DB search
MVVLPAMPLGVDAPTLSAEVIGPNEHSEPDAVVLNSLSYAYAGHRPVLSDLSLKLPRGSR
CLLIGANGAGKTTLLQILAGQYMVGKDAVRILNRPAFHDIQLTSSGELSYLGQQWRRDVA
FAGYNVPIQGDIAAGKMIFGVEGVDPDRRQKLIDLLEINLEWRLNKVSDGQRRRVQICMG
LLKPYQVLLLDEITVDLDVVGRLDLLNFFVEECEVRGATIIYATHIFDGLERWITHLAYV
SEGRLQKSAPVGEVAELQSGRKLLRIVEGWLRAELEASRAREAADPAAKAVRPGAALPKQ
AGPLMHSKHMMFFRG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggtggtactgcctgccatgccactgggtgttgatgccccaacattgagcgcagaggtc
attggccccaatgagcactctgagcctgacgctgtcgtactcaattctttgagctacgcg
tacgctgggcacaggcctgtgctgtcagacctctctctaaagctgccacgaggcagcaga
tgcctgctcattggggccaacggcgctggcaaaacaacgctgctgcagatcctggcgggg
cagtacatggtgggcaaggatgccgtcaggatcctgaacagaccggctttccacgacatc
cagctgacatcatctggtgagctcagctacctgggccagcagtggcgcagagatgtggcc
tttgccggctacaacgtgcccatacagggggacattgcggctgggaagatgatctttggg
gtggagggggtggatccggacaggcggcagaagctgatagacctgctggagatcaatctg
gaatggcgcttaaacaaagtgtctgacggccagcgccgccgagtgcagatctgcatgggc
ctccttaagccctaccaggtgctgctgctggatgagatcacagtggacttggatgtggtg
gggcgtctggacctgctaaacttcttcgtagaggagtgcgaagtgcgtggagccaccatc
atctacgctactcacatctttgacggtctcgagcgctggatcacccacctcgcctatgtg
tccgagggtcgcctgcagaaaagcgcgccagtgggggaggtggcggagctgcagagcggg
cggaagctgctgcgcattgtggagggctggctgcgcgctgagctggaagcttcccgcgcc
cgagaagctgccgacccggctgccaaagccgtgcggccgggtgccgctctgccaaagcag
gccgggcccctcatgcacagcaagcacatgatgttcttccggggatga
DBGET
integrated database retrieval system
