KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_40196
Entry
COCSUDRAFT_40196  CDS       T02914                                 
Name
(RefSeq) hypothetical protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    COCSUDRAFT_40196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csl03400]
    COCSUDRAFT_40196
Enzymes [BR:csl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCSUDRAFT_40196
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     COCSUDRAFT_40196
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_A_C RNA_ligase BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 17044019
NCBI-ProteinID: XP_005650559
JGI: 40196
UniProt: I0Z5U6
LinkDB
AA seq 1267 aa
MKPKPSELRFKTLCDFFDACASRKKSSRKKELLRDFANKFIERGSSDVYEIYRLMAPSLD
KERDHYNLREANLVRVLIKACLLDPKTSSAAKRAENWRQAGVKNAGQFSNVMEEYLFRTC
CGKQRGMSGEAELTVGELNDILNKLAGGGGEEQVKLFTHLIQITTATQMRWIVQIVLRDL
KIGLSETSILKEYHVDAVERYNVTCDFPGVIRELTDPHKRFPFQDIKVGKPAKPQLARAV
KGPEEAFNIMKGRPFVVETKFDGERMQVHVMEDEVQYYSRRGIEHGTYSHYTMLDSFIRK
QLRETNVILDGEVVVWNKTKKKFEPFGGMKGAVLAAKDNKGPDEKLEMNGWHGDTMTSDP
DYETPFVKDLELVFVVFDILYLRDQSVINRTLLERHELLKELVIPAPAEGHPVSCAMTGR
MVCLLPGAPLITGVPGSKLSYVLDDIQEKFEESIRVNEEGIVVKAADSPWRCNDRGMAWL
KIKADYVHKVEIDAVIIGAKFGTGRRGGAIAEYLLALAEVPQGGTTEPSTFVSFCVVGTG
VNDADRDTLAKRLEPLFVDNVKGKNCVPRCYRTTGMPKERPDVWIKDPTRSVVLQVQADV
RTIVSKQFASRHSLRFPRVQRVRWDKGPLDIQTDQELWDIVESNQGAIVGGEGHDMESPA
GKGKGRGKKRAVKGAATPAQQRSKVVEQFLPTDVSHIRRECDALRDSLVYFVPAPVKTAK
YPKKYLEEVVARLGGKVTQNYVPRVTHVIAQDANDPFFKARRDKVDMISVEWLLECAAKQ
ALISLRPHHYMHLTRDTRNNVPNVCIYGDMYYEDVSAIDVKVILNNHAHLEPGALDDLAA
LMADEAGEPQPGVASRADGTAQLYKRLKRKPGVEDIMLAVDRELAEYGLLDSTACLFRGC
HICLLQLPDDTCPAAKDSAQESAAAAKRELAALQAQRRKLEVMLHGGKAQDAIDMSTTHI
VVIPPANCAMPRLSPADLLGILHSEKGGTAGLTTLRKLLAAGEVHIVMQSWLEESLEALR
QAAEGQAVRRASELRHTVPLSSDSAPDTVADAPEDIPRNVDSYVLTFAAASFEDWGWEDF
GVTTAATPVTSGKRGRSTSPGEGTAGTRAKRGRGSRSGKTAGSTRGRGGKAAKPPPLAPD
VGKKPSRGGAGRGRGRGRKKYVIDDTSSSSDGEQPDMDASVSAHGHQSTSMLEDLLSLPI
TGNDALPAPAIGGPVFSAGSRKHRCWSSERQAGFRSSSSAGRQCSPVDTRKFTAFGRATA
FGRAAHC
NT seq 3804 nt   +upstreamnt  +downstreamnt
atgaagccgaagccgagcgagctgcgttttaagactctgtgcgactttttcgacgcttgc
gctagtcggaaaaagtcatcaaggaagaaggagcttctgagggattttgcaaacaagttc
atagagcgtggatcgtccgatgtgtacgagatctaccgcctcatggcaccctcgctggac
aaggagcgcgaccactacaatttgagagaggcaaacctggtcagggtcttgataaaagca
tgcttgttggacccaaaaacatcctctgcagcaaagagagccgagaactggcgccaggcg
ggcgtgaagaacgccgggcaattctcaaatgtcatggaagagtacctcttccggacgtgc
tgtgggaagcagaggggcatgtcaggagaggcagaactgacagtgggcgagctcaatgac
attttgaacaagctagccggcggcggcggtgaggagcaggtcaaattgttcacgcacctg
atccagatcaccacagccacacagatgcgctggattgtgcaaattgttctaagggacctc
aagattggactctcagagacgagcatcctgaaggagtatcatgtggacgctgtggagcgc
tacaatgtcacctgtgacttccctggggtcatccgagagctcactgacccgcacaagagg
tttccgttccaggacatcaaggttggcaagcctgccaagccccagctggccagagctgtg
aaggggccagaggaggccttcaacatcatgaagggcagaccattcgtggtggagaccaag
tttgatggcgagaggatgcaggtgcatgtaatggaggatgaagtgcagtactacagccgc
aggggaattgagcatggcacctactcccactacaccatgctggactctttcatcagaaag
cagctgcgagagacaaatgtcatccttgatggcgaggttgttgtctggaacaagactaag
aagaagtttgagccatttggcggcatgaagggggctgttctggcggcaaaggacaacaag
gggcccgacgagaagctggaaatgaacggatggcacggtgacacaatgaccagcgaccca
gactacgagacgccctttgtcaaggacctggagctggtctttgtggtcttcgacatcctg
tacctgcgcgaccagagtgtgatcaaccggaccctgctggagcgccacgagctgctgaag
gagcttgtgatccctgcgcctgccgagggccatccagtcagctgtgccatgactgggcga
atggtctgcctgctgccgggcgcacccctcatcaccggcgtgccgggctcgaagctctcc
tacgtactcgacgacatccaggagaagttcgaggagtccatccgcgtcaatgaggagggg
attgtggtgaaggcggcagactcgccgtggcgctgcaacgaccgcggcatggcctggctc
aagatcaaggcggactatgtgcacaaggtggagatcgacgcggtcatcatcggagccaag
tttggcaccggcaggcgaggaggcgccatcgctgaatacctgctggccctggctgaggtg
ccccaagggggcaccacagagccctccacctttgtctccttctgcgtggtgggcacaggg
gtgaatgatgcggaccgtgacacgctggcaaagaggctggagccgctgtttgtggacaat
gtgaaggggaagaactgcgtcccgcgctgctaccgcacgactgggatgccaaaagagagg
ccggacgtgtggatcaaggaccccactcgcagtgttgtcctccaggtgcaggcagacgtg
aggacaatagtgagcaagcaatttgcgtcgcgccactcgctgcgctttccgcgggtgcag
cgtgtgcgctgggacaagggccctttggacatccagaccgaccaggagctgtgggacatt
gtcgagtccaaccagggcgccattgtgggcggggagggccatgacatggagagcccggca
gggaagggcaagggccggggaaagaagcgcgcagtaaagggggcagcgacgccggcacag
cagcgcagcaaggtggtggagcagtttctgccgacggacgtgtcccacatccgccgggag
tgcgacgcgctgcgagactccctggtctattttgtgcctgctcccgtcaagaccgccaag
taccccaagaaatacctggaagaggtcgttgcgcgcctcggcggcaaggtgacccagaac
tacgtgccgcgcgtgacgcacgtgatagcgcaggacgcgaacgatcccttcttcaaggcg
cgcagggacaaggtggacatgatcagcgtggagtggctgctggagtgcgctgccaagcag
gcgctcatctccttgcggccccaccactacatgcacctcacgcgcgacacccgcaacaac
gtccccaatgtctgcatatacggcgacatgtactatgaggatgtcagcgcgattgatgtg
aaggtcatcctgaacaatcacgcccacctggagcctggggcactggatgacctggcggca
ctcatggctgatgaggctggcgagccgcagccaggagtggccagccgagcagatggcaca
gcgcagctctataaaaggctgaagaggaagccgggtgtggaggacatcatgctggcggtg
gacagggagctggcagagtatggcctgctggacagcactgcctgcctcttccgcggctgc
cacatctgcctgctgcagctgcccgacgacacctgccccgctgctaaagacagcgcccag
gagtcggctgccgctgcaaagcgcgagctggctgcactgcaagcccagcgcaggaagctt
gaggtgatgctgcatggaggcaaggcgcaggatgccatcgacatgtccaccacccacatc
gtcgtcattccccctgccaattgcgcgatgccccgcctgagccctgcagacctgctgggc
atcctgcacagcgagaaaggcggcaccgctggcctcaccaccctgcgcaagctgctcgct
gctggcgaagtgcacattgtcatgcaaagctggttggaggagagcctggaggccctgagg
caggcagcagaagggcaggctgtgcggcgtgcatcggagctgcggcatactgtgcctctg
agcagtgacagcgcgcctgatactgtagcagacgcacctgaggacatccccagaaatgtg
gactcatatgtgctcacctttgccgctgccagttttgaggactggggctgggaagatttc
ggggtgaccactgctgcgacgccggtcaccagcggcaagcggggccgcagcacgagcccg
ggagaggggaccgccggcacgcgcgctaaacgcggcagaggcagcagaagcggcaagacc
gccggcagcacaaggggcaggggcggaaaggcagccaagccgccgccgcttgcgcctgat
gtcggcaagaagcctagccggggtggcgcggggagaggccgagggagaggaaggaagaag
tacgtcattgatgacaccagcagcagcagtgatggcgagcaaccagacatggatgccagc
gtgtccgcacatggccatcagagcacgtccatgcttgaggacctgctgagcctgcccatc
acaggcaatgatgctctacctgcaccagccatcggtggacccgtcttctctgccgggtcc
aggaagcaccggtgctggagctcagagagacaggcaggcttccggagctcatcatccgca
ggaaggcagtgctcaccggtggacacacgaaagtttacagcctttggcagagccacagcc
tttggcagagcagcccactgctga

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