Campylobacter subantarcticus LMG 24374: CSUB8521_0718
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Entry
CSUB8521_0718 CDS
T03571
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csm
Campylobacter subantarcticus LMG 24374
Pathway
csm03030
DNA replication
csm03410
Base excision repair
csm03420
Nucleotide excision repair
csm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSUB8521_0718 (ligA)
03410 Base excision repair
CSUB8521_0718 (ligA)
03420 Nucleotide excision repair
CSUB8521_0718 (ligA)
03430 Mismatch repair
CSUB8521_0718 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csm03032
]
CSUB8521_0718 (ligA)
03400 DNA repair and recombination proteins [BR:
csm03400
]
CSUB8521_0718 (ligA)
Enzymes [BR:
csm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSUB8521_0718 (ligA)
DNA replication proteins [BR:
csm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSUB8521_0718 (ligA)
DNA repair and recombination proteins [BR:
csm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSUB8521_0718 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSUB8521_0718 (ligA)
MMR (mismatch excision repair)
DNA ligase
CSUB8521_0718 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSUB8521_0718 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
HAT1_C
NYD-SP28_assoc
PPP1R21_helical
Motif
Other DBs
NCBI-ProteinID:
AJC90569
UniProt:
A0A0A8HCF2
LinkDB
All DBs
Position
698901..700856
Genome browser
AA seq
651 aa
AA seq
DB search
MTYQEYLEKVKLAKEWMRAYYEDDEPLASDEEYDKLIRELKEFEVKYPEKIAKDSPTQNI
APTIQSEFHKLAHSAKMWSMEDVFDEAELRAWAKRAKCEFNFFIEPKFDGVSLNLTYENG
ILISGATRGDGEVGEDITLNVKEISNIPQKIPYKDKIEIRGEVVILKEDFEKINEKRAKD
GLSLFANPRNGASGSLRQLDTSITKERNLKFYPWGVGENSLEFKKHSEVMEFIRSLGFLK
DDFVFCVKTLDEVLERYHELLEKRDQKPMMMDGMVVRVDDLAHCEFLGYTVKFPKFMAAF
KFPALEKTTTLLGVNLQVGRSGVITPVAVLDPVNLDGVVVKSATLHNFDEIARLGVMIGD
SVSVIRSGDVIPKITKVFTQRRDGLESKISKPTLCPECSSELLDEGAFLKCQNLDCKARL
VNSIIHFVSKKCLNIDGLGENIVELLFKEGKITNIESIFFLKYSDFEGLEGFKEKKINNL
LSAIENAKKCPLSRFITALGIEHIGEVAAKKLAQSFGFEWFMQSYEAYANLEGFGEQMAK
SLEEFTHINAKRIEHFYEILHLEDEKKELVLNENISNKTFVITGTLSKSRDHFKELIESF
GAKVSSSVSKKTDFVLYGSEAGSKLEKAQSLGVKCINEAEFNALLGGADEV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaagagtatttagaaaaagtaaaactagcaaaagaatggatgagggcttac
tatgaagatgatgagcctttagcaagtgatgaggagtatgataaactcattagagaattg
aaagaatttgaagtaaaataccctgaaaaaattgctaaagattctcctacgcaaaatatc
gccccgacgatacaaagtgaattccacaagcttgcacatagtgcaaaaatgtggtctatg
gaagatgtttttgatgaagctgagcttagagcttgggcaaaaagagctaaatgtgagttt
aattttttcatagaacctaaatttgatggagtaagtttaaatcttacttatgaaaatggt
attttaatcagcggtgctacaaggggcgatggagaagtaggcgaggatattactttaaat
gtaaaagagatatctaatatacctcaaaaaattccttataaagacaagatagaaattcgc
ggcgaagtggtgattttaaaagaagattttgaaaaaatcaatgaaaaaagagccaaagat
ggcttaagtttatttgcaaacccacgtaatggggcaagtggttcactaagacagcttgac
acaagcattacaaaagaaagaaatttaaaattttacccttggggagtaggggagaattct
ttggagtttaagaagcactctgaagtgatggagtttataagaagtcttggttttttaaaa
gatgactttgttttttgtgtgaaaactttagatgaggttttggaaagatatcatgagctt
ttagaaaaaagagatcaaaagcctatgatgatggatggtatggttgtaagggtagatgac
ttagcccattgtgaatttttaggctatactgtgaaatttccaaaatttatggcagcattt
aaatttcctgctttggaaaaaactaccaccttgcttggagtgaatttacaagtaggaaga
agcggagtgatcactcctgtggcagtgctagatcctgtaaatttagatggagtggtggtg
aagtctgcaaccttgcataattttgatgagatagcaagactaggagtgatgataggcgat
agtgtaagtgtgataagaagtggcgatgtgataccaaaaatcaccaaagtttttacccaa
agacgtgatggtttagaaagcaaaatctccaaaccaactctttgccctgaatgttctagc
gagcttttagatgagggtgcttttttaaaatgccaaaacttagactgcaaagcaagactt
gtaaattccattatacattttgtatccaaaaagtgtttaaatatagacggccttggagaa
aacatcgtcgagcttttatttaaagaaggaaaaatcaccaacatagagagtatatttttc
ttaaaatacagtgattttgaaggtttagaaggctttaaagagaaaaaaatcaacaatctt
ctaagtgctattgaaaatgcaaaaaaatgccctttatcaagatttatcaccgcattgggt
atagagcatattggcgaagtagcggctaaaaagctggcacaatcttttggctttgaatgg
tttatgcaaagttatgaagcttatgcgaatttagaaggctttggcgaacaaatggctaaa
agcttagaagaatttactcatatcaacgcaaagcgtattgagcatttttatgaaatttta
cacttagaagatgagaaaaaagagcttgttttaaatgaaaatatttctaataaaaccttt
gttatcacgggtactttaagcaaatcacgcgatcattttaaagagctaattgaaagtttt
ggtgcaaaagtaagctcaagtgtgtctaaaaaaactgactttgtattatatggaagtgaa
gcaggctcaaagcttgaaaaagcacaaagtttaggggttaagtgtatcaatgaagccgag
tttaatgcccttttaggtggtgctgatgaggtttga
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