Cetobacterium somerae: MKD34_00345
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Entry
MKD34_00345 CDS
T08261
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csom
Cetobacterium somerae
Pathway
csom03030
DNA replication
csom03410
Base excision repair
csom03420
Nucleotide excision repair
csom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKD34_00345 (ligA)
03410 Base excision repair
MKD34_00345 (ligA)
03420 Nucleotide excision repair
MKD34_00345 (ligA)
03430 Mismatch repair
MKD34_00345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csom03032
]
MKD34_00345 (ligA)
03400 DNA repair and recombination proteins [BR:
csom03400
]
MKD34_00345 (ligA)
Enzymes [BR:
csom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MKD34_00345 (ligA)
DNA replication proteins [BR:
csom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKD34_00345 (ligA)
DNA repair and recombination proteins [BR:
csom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MKD34_00345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKD34_00345 (ligA)
MMR (mismatch excision repair)
DNA ligase
MKD34_00345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKD34_00345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
RNA_ligase
BRCT_2
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UPO97315
LinkDB
All DBs
Position
70550..72598
Genome browser
AA seq
682 aa
AA seq
DB search
MLKLFDLVEESEPKKRIDELRKEIERYNYYYYTKNESIISDFEFDKLLKELEKLEKEYPE
FKEDISPTKHVGAIDLKETKFKKVIHKKPMLSLSNSYNIEDVVAFTERIEKNLEYKHEKL
EYVLELKLDGASISITYEKGQLVRAVTRGDGIEGEDVTENILAINTIPNYLKEDVDLEVR
GEIVLPLSQFEKLNEERLKNGEEIFANPRNAASGTLRQLDSEIVKERGLDAYFYYVVEPL
KYGFKTHRESLDYLDKVGIKTTGVAEVIDDLTIMEKRIAYWEIEREKLDFETDGLVIKLD
NIDLWDEVGYTTKSPRWAIAYKFPAKQVTTKLLGITWQVGRTGKVTPVAELEEVELSGSR
VKRASLHNMDEILRKDIRVGDRVFIEKAAEIIPQVVSSIKEVRTGEEKEVVPPTNCPVCE
SVLEKEDGLVDLKCVNPNCPAIIQGSIEYFVSRDGMNISGFGSRIVERMLELNYIKDITD
IYNLGERKEELIQLDKMGEKSVEKLLASIEKSKERPYSKTLYALGIPFVGKFLGNVLAKK
SKNIDRLSQMSKEELLEIDGVGDKVAESVYNFFRDEKSMIIVKKLKDYGINFGKSDEDVE
EKIIENGKFSGKTFLFTGKLQRFKREEIKDLIESLGGTNLSSVSKKLDYLIVGEDAGSKL
TKAKEIGTINILTEDEFIELTK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaactttttgatttagttgaagagagtgagccgaaaaaaagaatagatgaatta
agaaaagagatagagcgttataactattattattatactaaaaatgaatctataatctca
gattttgaatttgataaacttttaaaagagttagaaaaattagaaaaagaatacccagaa
tttaaagaggatatatctccaacaaaacatgtgggagccattgatttaaaagaaactaag
tttaaaaaagttattcataaaaagcctatgttaagcttaagtaactcatataatatcgag
gatgtagttgcttttacagagagaatagaaaaaaatcttgagtataagcatgaaaaatta
gaatatgttcttgagttaaagttagatggagctagtataagtataacttacgaaaaaggt
caacttgtaagagcagtaacaagaggcgatggaatagagggagaggatgttacagaaaat
atcttagctattaatacaattcctaattacttaaaagaggatgttgatttagaggttaga
ggagagattgtacttcctttaagtcaatttgaaaaattaaatgaagaaagattaaaaaat
ggtgaagagatatttgctaacccaagaaatgcagctagtggtactttaagacagctagat
tcagaaatagttaaagaaagaggattagatgcttatttctattatgtagtggaaccttta
aaatatggttttaaaactcatagagagagtttagattatttagacaaagtaggaataaaa
acaactggagtagctgaggttattgatgacttaactattatggaaaaaagaatagcttat
tgggagattgaaagagagaagctagactttgaaacagacgggttagtgataaagttggat
aatatagatttatgggatgaagttggatatacaacaaaaagtccaagatgggcaatagct
tacaaatttccagcaaagcaggtaacaactaaacttttgggtataacttggcaagttgga
agaactggaaaagttactcctgtagcagagttagaagaggttgaactatctggaagcaga
gttaaaagagctagtttacataatatggatgagattttaagaaaagatattagagttgga
gatagagtattcatagaaaaagcagctgaaattattccacaagttgtaagttctataaaa
gaggttagaacaggagaggaaaaagaagttgttcctccaacaaactgcccagtgtgcgaa
tcagttttagaaaaagaagatgggttagttgatttaaagtgtgtaaatcctaactgtcca
gcaattattcaaggaagtattgagtattttgtttctcgtgatggaatgaatataagtgga
tttggaagtagaattgtagaaagaatgctagagttaaattatataaaagatatcaccgat
atatataatttaggagaacgtaaagaagaacttatacaattggataagatgggagaaaaa
agtgtagagaaacttttagcttcaatagaaaaaagtaaagagagaccgtattctaaaaca
ctatatgctttaggaataccttttgttggaaaatttttaggaaatgttttggcaaagaaa
agtaaaaatatagatagattatctcaaatgtctaaagaggaacttttagagattgatggt
gttggtgataaagttgctgagtctgtttataacttttttagagatgaaaaatcaatgata
attgtaaaaaagttaaaggattatggaataaattttggaaaatcagatgaagatgttgaa
gagaaaattatagaaaatggcaaattttcaggaaagaccttcctatttacaggaaaatta
caaagatttaaaagagaagagattaaagatttaatagaatctctaggtggaacaaattta
tcatcagtaagtaaaaagcttgattatttaattgttggagaagatgcaggtagtaaatta
acaaaggcaaaagagattggaacaataaatattttaacagaagatgaatttatagagtta
acaaagtaa
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