Corynebacterium simulans: WM42_0249
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Entry
WM42_0249 CDS
T04316
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csp
Corynebacterium simulans
Pathway
csp03030
DNA replication
csp03410
Base excision repair
csp03420
Nucleotide excision repair
csp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WM42_0249 (ligA)
03410 Base excision repair
WM42_0249 (ligA)
03420 Nucleotide excision repair
WM42_0249 (ligA)
03430 Mismatch repair
WM42_0249 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csp03032
]
WM42_0249 (ligA)
03400 DNA repair and recombination proteins [BR:
csp03400
]
WM42_0249 (ligA)
Enzymes [BR:
csp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WM42_0249 (ligA)
DNA replication proteins [BR:
csp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WM42_0249 (ligA)
DNA repair and recombination proteins [BR:
csp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WM42_0249 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WM42_0249 (ligA)
MMR (mismatch excision repair)
DNA ligase
WM42_0249 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WM42_0249 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AMO88003
LinkDB
All DBs
Position
complement(249723..251741)
Genome browser
AA seq
672 aa
AA seq
DB search
MTNPVDIQREWSELAQEVRKHRELYYNGEPAIPDADFDKLFQKLLQLEAEHPELAVPDSP
TQQVGATPAEGADIEHLERLYSLDNVFDEAEMQDWLDRTPAKSYLTELKIDGLSIDLVYR
GGKLITAATRGDGRVGEDITANARVIPDIPHELSNSDEYPVPELVEIRGEVYMRPDEFAE
INAARREDGKPTFANPRNAAAGGLRMKDPNEVKKRRLHMVCHGIGAREGFEPTSQHDAYK
ALEAWGLPVSPYTKKVSSAAAVQKEVKYWAEHRHDAYFEMDGLVVKVDDLASQRALGATS
RAPRWAIAYKYPPEEVTTKLLDIEVGVGRTGRITPFAVMEPVFVSGSTVSKATLHNQFEV
KNKGVMIGDTIVIRKAGEIIPEVLGPVLELRDDSVHEWVFPENCPSCGTRLAPQKDGDQD
WRCPNTRSCPAQLSARLEYLASRKGMDIEALGEKAAIDLIESGVLVDEAELFDLDEEKLL
QSSAYTTKAGKLNAQGKKLLKNLESARQTDFWRVLVSLSIRHVGPIAARALATRFGSMEA
LRAASESELADTDGVGGIIAASFKAWFEIDWHRNIVEKWANAGVTMEDTVTEKLEQTLEG
LTIVVTGTLEDFSRDSAKEAIIARGGKASGSVSKKTDYVVVGENAGSKETKARDLGLTIL
DEEGFKELLATS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatccagtagatattcaacgcgaatggtccgaactagcgcaggaagtgcgcaag
caccgggagctttattacaacggtgagcccgcgattccagatgcagatttcgacaagctt
ttccaaaagcttctgcagctagaggcagagcatccggagttggcagttccggattctccg
acccagcaggtcggcgcgaccccagccgagggtgcggatattgagcacctagagcgcctc
tacagcttggataacgtcttcgatgaggcagagatgcaggattggctggataggactccg
gcgaagtcctatctgactgagctgaagatcgacggactttccattgatttggtttaccgc
ggcggcaagcttattacggctgcaacgcgtggcgacggccgcgtgggtgaagacattacg
gcgaatgcgcgggtcatcccagatattccgcatgagctaagcaacagcgatgaatatccc
gttccagagctagtggaaatccgcggcgaggtgtacatgcgccctgacgagtttgcggag
attaacgcggcacgccgcgaagacggcaagccgacgtttgccaatccgcgcaatgcagcg
gcaggtggcttgcgcatgaaggacccgaacgaggtcaagaagcgtcgcctgcacatggtc
tgccatggcatcggtgcccgtgagggctttgagccgacctcccagcatgatgcgtacaag
gcgctggaggcttgggggctgccggtttcgccatatacaaagaaggttagctcggctgca
gccgtgcaaaaggaagtgaagtattgggcagagcatcgccatgatgcttacttcgagatg
gatggtctcgtggtcaaggtcgatgacttggcttcacaaagggcgctgggcgcgacgtcg
cgtgcgccgcgctgggccatcgcgtacaagtacccgccggaggaagtgaccacgaagctg
ctggacatcgaggtcggtgtgggacgtaccggcaggattacgccgtttgcagtgatggaa
ccggtattcgtgtctggttcgacggtgtcgaaggcaaccttgcacaaccagttcgaggtc
aagaacaaaggcgtgatgattggcgataccatcgttatccgcaaggccggtgaaatcatt
cctgaggtgctggggcccgttctcgaactgcgcgacgatagcgtgcatgagtgggtgttc
ccggaaaactgcccatcctgtggcacgaggttggcaccgcaaaaagacggcgaccaagac
tggcgttgtcccaatacgcgcagctgcccggcacagctttccgcccgcctggagtatttg
gcttctcgcaaaggtatggacattgaggccttgggtgagaaggccgccattgacctcatc
gagtcgggagtgctggtcgacgaggcggaactcttcgatttggatgaggaaaagctgctg
cagtcttctgcctatacgaccaaagcgggcaagctcaacgcgcaaggcaagaagctgttg
aagaacttggaaagcgcgcggcagactgacttttggcgagtgcttgttagcctttcgatc
cgccacgttggcccgattgccgcgcgtgcattggcgacgcgtttcggttcgatggaggcg
ctgcgcgcggcgtcggaaagcgagctcgcggataccgacggcgtaggcgggattatcgcg
gcgtcgtttaaggcctggttcgaaatcgactggcaccgcaacatcgtggaaaagtgggcg
aatgctggcgtgactatggaagatacggtcaccgaaaaactagagcagacgctcgagggg
cttaccatcgtcgtgaccggcaccctggaggacttctcccgcgactcggcgaaggaggcc
attatcgcaaggggaggaaaggcttctggctcggtgtctaagaagaccgactacgtcgtg
gttggtgagaatgccggctcgaaggaaacgaaggcgcgcgatctgggcctgaccatcttg
gatgaggagggctttaaggagctgttggctacttcctaa
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