Campylobacter sputorum: CSF_0442
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Entry
CSF_0442 CDS
T04992
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cspf
Campylobacter sputorum
Pathway
cspf03030
DNA replication
cspf03410
Base excision repair
cspf03420
Nucleotide excision repair
cspf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cspf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSF_0442 (ligA)
03410 Base excision repair
CSF_0442 (ligA)
03420 Nucleotide excision repair
CSF_0442 (ligA)
03430 Mismatch repair
CSF_0442 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cspf03032
]
CSF_0442 (ligA)
03400 DNA repair and recombination proteins [BR:
cspf03400
]
CSF_0442 (ligA)
Enzymes [BR:
cspf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSF_0442 (ligA)
DNA replication proteins [BR:
cspf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSF_0442 (ligA)
DNA repair and recombination proteins [BR:
cspf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSF_0442 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSF_0442 (ligA)
MMR (mismatch excision repair)
DNA ligase
CSF_0442 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSF_0442 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
DNA_ligase_ZBD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ASM36353
LinkDB
All DBs
Position
447240..449183
Genome browser
AA seq
647 aa
AA seq
DB search
MDKNQYKNAVETLNLWAKAYYTLDNPIATDDEYDKLYHEVLEYENAHEDEILAYSPTLRV
GGAISEKFEKSAHIAPMWSMEDIFNNDELIAWINRGLKFNNDFYVEPKFDGASLNLLYED
GILVKATTRGDGLIGENVTLNAKTITSIPLKIDYKESIEIRGEVVIKKSDFDLINDERAK
NSQPLFSNPRNAAAGSLRQLDSKVTASRKLMFLPWGVGNNSLKFQKHSEIMAFIRSLGFV
QDDFLKVCKNADEIQDAYNNLVLNRDKKPIMMDGMVIRVDDLQKCTELGYTVKFPKFMVA
YKFPAIEKVTKLLDVTLQVGRSGVITPVGVLEPVNIDGANVKSATLHNFDEIERLGLMKN
DFVNIIRSGDVIPKITNVFKDRRDGSQSKIYRPEFCPVCSSKLLDEGVFIKCQNIDCRAR
VINSIIYFASKTCMDIDGLGDAIVELLVNSGKINSISDIYTLKDEDFRDLDGFKDKKITN
LLNAIEDSKTRELERFITSLGIEHIGIVAAKKIAKTYPNDWLNLSYNDLLSLDGFGEIMA
KSYIQFVSINRQKIENLLSFITPITKEQGIINNAFTGKTIVITGTLSKPRDDFKRELESF
GAKVTNSVSKKTDYVLYGDEAGSKFDKAINLGLKTINEDEYEKLCEI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatcaatacaaaaatgctgtagaaacgctaaatttatgggcaaaagcttat
tatacattagataatccaatcgcaacagatgatgagtatgataagctgtaccatgaagtg
cttgagtatgaaaacgctcatgaagatgagattttagcttattctcctacattaagagta
ggtggagctataagtgaaaagtttgaaaaatcagcccacatagcaccaatgtggtcaatg
gaagatatttttaataatgacgagcttattgcttggataaataggggtttgaaatttaac
aacgatttttatgttgagcctaaatttgatggtgctagtttaaatttattatatgaagat
ggaattttggttaaggctacaacaagaggcgatggcttgattggagaaaatgtaacttta
aatgcaaaaactataacttcaattccgcttaaaattgactataaagaaagcatagaaata
cgcggagaagttgttataaaaaagagtgattttgatcttataaatgatgaaagagcaaaa
aattcacagcctttattttcaaatccaagaaatgcagccgcaggaagcttaagacagctt
gatagtaaagtaactgccagtagaaaacttatgtttttgccttggggtgttgggaataat
tcattaaaatttcaaaagcatagtgagattatggcatttatacgctctcttggtttcgtg
caagatgattttttaaaagtatgtaaaaatgcagatgagatacaagacgcttataataat
cttgttttaaatagagataaaaagcctatcatgatggatggtatggttataagagttgat
gatttgcaaaaatgcacagagcttggatatactgttaagtttccaaaatttatggttgct
tataaattcccagccatagaaaaagttaccaagcttttagatgttactttgcaagttgga
agaagcggtgttataactcctgttggggttttagagcctgtgaatatagatggggcaaat
gtaaaatctgcaactcttcataactttgatgagattgagcgtttagggcttatgaagaat
gattttgtaaatattataagaagtggcgatgtgataccaaaaattacaaatgtttttaaa
gacaggagagatggttcgcaaagtaaaatttatagacctgagttttgtcctgtgtgctct
tcaaaactgcttgatgagggtgtgtttatcaaatgtcaaaatattgattgtagggctaga
gttataaattctattatatattttgcatctaaaacttgtatggatatagatggtcttgga
gatgctatagttgaacttcttgtaaatagtggtaaaatcaactctatttcagatatctac
acacttaaagatgaggattttagggatttagatggatttaaagataaaaagataacaaat
cttttaaatgcgatagaagatagcaaaacaagagaacttgaacgttttataacttctctt
gggatagaacatattggcattgtagctgctaaaaagatagccaagacatatcctaatgat
tggttaaatttgagttataatgatctgcttagtttagatggttttggcgaaataatggca
aagagttatattcagtttgtatccataaatagacaaaaaatagaaaatttactcagtttt
ataactccaattacaaaagagcagggcattataaataatgcatttactggaaaaactata
gttataactggaactttaagtaaacctagagatgattttaaaagagaacttgaaagtttt
ggtgcaaaagttacaaactcagtttctaaaaaaactgattatgttttatatggagatgaa
gctggaagcaagtttgataaagcaatcaatcttggcctaaaaacgataaatgaagacgaa
tacgagaaactttgtgagatttga
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