Cytobacillus spongiae: LS684_02355
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Entry
LS684_02355 CDS
T09119
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cspg
Cytobacillus spongiae
Pathway
cspg03030
DNA replication
cspg03410
Base excision repair
cspg03420
Nucleotide excision repair
cspg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cspg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LS684_02355 (ligA)
03410 Base excision repair
LS684_02355 (ligA)
03420 Nucleotide excision repair
LS684_02355 (ligA)
03430 Mismatch repair
LS684_02355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cspg03032
]
LS684_02355 (ligA)
03400 DNA repair and recombination proteins [BR:
cspg03400
]
LS684_02355 (ligA)
Enzymes [BR:
cspg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LS684_02355 (ligA)
DNA replication proteins [BR:
cspg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LS684_02355 (ligA)
DNA repair and recombination proteins [BR:
cspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LS684_02355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LS684_02355 (ligA)
MMR (mismatch excision repair)
DNA ligase
LS684_02355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LS684_02355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UII56348
LinkDB
All DBs
Position
435773..437779
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQMAEQRVQELHQLLNQYNYEYHVLDKPSVPDAEYDQLIHELIQLEEAFPGLKTLDSP
SQRVGGSILDMFEKVQHEIPMLSLGNAFNEQDLRDFDRRIRQAVGDRFTYVCELKIDGLA
VSLRYENGLFMQGATRGDGTIGEDITSNLKTIRSIPLRLKDEVTMEVRGEAFMPKKSFES
LNQAKVEKGEEPFANPRNAAAGSLRQLDPKMAASRNLDIYLYSIANIGELNIHSHSQGLT
YLDELGFKTNKERKTCPTIEEVIEYVDGWVEKRPSLPYEIDGIVIKVDSLDQQKELGTTA
KSPRWAIAYKFPAEEVVTTLKHIELSVGRTGVVTPTAILEPVQVAGTTVQRASLHNEDLI
REKDIRIGDQVVIKKAGDIIPEVVNVLADRRTGDEMEFSMPTHCPECESELVRLEEEVAL
RCMNPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAEKLIQDVADLYKLTYDLLIQL
ERMGEKSANNLLQAIEVSKDNSLEKLLFGLGIRHVGAKAAKTLSQTFGTMSELAKASREE
LTAINEIGDKMADSIVTFFDMEEVQELLEELVSAGVNMEYKGPKPVSVEDSDSFFAGKTV
VLTGKLEQMSRNEAKDQIEQLGGKVAGSVSKKTDLVVAGADAGSKLAKAEELGIEVWSEE
KLLEELSK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaaatggcagaacagagagtacaagaattacatcagctgttgaatcaatat
aattatgaatatcatgtattagacaagccatccgtaccagatgcagaatatgatcaatta
atccatgagcttattcaattagaagaagcttttccaggattaaagacacttgattcgcct
tctcagcgtgtgggcggaagcattcttgatatgtttgaaaaggttcagcacgaaattccg
atgctgagcttagggaatgcgtttaacgagcaggacttgagagatttcgatcgtcggatt
cgtcaagctgtaggagatcgattcacttatgtatgtgaattaaaaatcgatggtcttgcc
gtatcgcttcgctatgaaaacggccttttcatgcaaggcgctactagaggagatggcacg
attggggaagatattacgtctaatttaaagacgatacgctcgattccccttcgtttaaaa
gatgaagtgaccatggaggtacgaggcgaagcatttatgccaaaaaagtcctttgaatcc
cttaatcaggctaaggttgaaaaaggtgaggagccatttgcaaatcctagaaatgcagct
gcaggttctttacgtcaacttgatcctaagatggcagcatctcgtaaccttgatatttat
ctgtatagcattgccaacataggtgagctaaatatccattcccatagccagggcctcaca
tatttagatgagcttggcttcaaaacgaataaagaaagaaaaacatgcccaacgattgaa
gaggtcattgaatatgtagatggttgggtggaaaaaaggccgagccttccgtacgaaatt
gatggtattgtgatcaaggttgattcacttgatcagcaaaaagagctaggtacaactgcc
aaaagtcctcgctgggcaatcgcttataaattcccagcagaggaagttgttactacatta
aagcatattgagttaagtgttggccgaacgggggttgtgacacctactgctatattagag
ccggtacaagtggcaggtacaactgttcagcgagcttccttacacaatgaggacttgatt
cgtgagaaggatattcgaattggtgatcaagtggttattaagaaagctggtgatatcata
cctgaggttgtaaatgtactagcagaccgccgcacaggtgatgaaatggaattttccatg
ccaacacattgcccggaatgtgaaagcgagctcgttcgtttagaggaagaagttgcccta
cgctgtatgaatccgaaatgtccagcgcaaatccgtgaagggctcattcactttgtctca
agaaatgcgatgaacattgatggccttggggagaaagtgattagccagctgtttgcagaa
aagctgattcaagatgtagctgacttgtataagcttacatatgatctattaattcagctt
gaacgtatgggagaaaagtcggctaataatcttttacaagcaattgaggtttcaaaggac
aactctcttgaaaaattgttatttggcttgggtatacgtcatgtaggtgccaaagcagcg
aaaacactttcacaaacgtttgggacaatgagcgagcttgcgaaagcttcgagagaagag
cttacggctatcaatgaaatcggagacaaaatggccgattcgattgtgacattttttgat
atggaagaagttcaagagcttttagaagaattggtttcagcaggtgtaaatatggaatac
aaaggaccaaagcccgtttcggttgaagactctgattcgttttttgcaggaaagacagtc
gttttaacgggcaaactcgagcaaatgagccgaaatgaagcgaaggatcagattgagcag
cttggtggaaaagtagcaggaagtgttagtaagaagacagatcttgtcgtagctggggca
gatgcgggatcaaagctagccaaagcagaggaattgggaatcgaggtatggtctgaggag
aagctgcttgaagaactaagtaaatag
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