Crateriforma spongiae: ACLV6H_20235
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Entry
ACLV6H_20235 CDS
T11503
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cspn Crateriforma spongiae
Pathway
cspn03030
DNA replication
cspn03410
Base excision repair
cspn03420
Nucleotide excision repair
cspn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cspn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACLV6H_20235 (ligA)
03410 Base excision repair
ACLV6H_20235 (ligA)
03420 Nucleotide excision repair
ACLV6H_20235 (ligA)
03430 Mismatch repair
ACLV6H_20235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cspn03032
]
ACLV6H_20235 (ligA)
03400 DNA repair and recombination proteins [BR:
cspn03400
]
ACLV6H_20235 (ligA)
Enzymes [BR:
cspn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACLV6H_20235 (ligA)
DNA replication proteins [BR:
cspn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACLV6H_20235 (ligA)
DNA repair and recombination proteins [BR:
cspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACLV6H_20235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACLV6H_20235 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACLV6H_20235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACLV6H_20235 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XNP80150
UniProt:
A0ACH3ZRV1
LinkDB
All DBs
Position
complement(5271317..5273395)
Genome browser
AA seq
692 aa
AA seq
DB search
MTDKSVAEEVQSLRQQIRHHDRLYYVDATPEISDLQYDRLLKRLQQLEQDHPDLRDPDSP
TMRVGDQPVAHLDQVAHRVPMLSIDNTYSRDELQAYFKRTEKSLDGQPVRWVMEYKIDGV
AASVRYEAGRMVLALTRGNGEVGDDITHNIRTVRDLPLILHDNGSVPDVLEIRGEVYMTN
ADLADLNVRQAERGEPLYKNTRNVTAGTIRLLDPAIAAQRNLRFFAHGIGEVSGMDADNH
MEFLKRLGDFGIPPTPDVMVFDHWSEAMKAVAALEDEMPDLPFEVDGIVFKVDDFASREK
LGIRSKSPRWLVAYKFERYEATTRLNQITVQVGKTGTVTPVAHLDPVEIAETTVSRASLH
NADEIERLDVREGDVVVVEKAGKIIPKVVRVEKHLRTDDLKPYVFPKQCPECDTELVRDE
GGVYIRCPNPACPAQLRQKLIYFGSRTGMDIDGLGDELVDVLLDRGLVKTYGDLYRLTAD
QVAELNWIRLRKGRDGKEIEVQVGQKNADSLIQGIDASRDRGLARVLASLSIRHVGPSVA
RIITGKYHTLDLLRDASQEDLADIHEIGDRIAGSLHEFIHSDVGRQTLDDLAAAGVKMTD
PEPVPDDDEQRWLSGKTLVVTGTLKHFKRDEIKKAITELGGRASGSVSKNTDFLVAGEKA
GSKLDKAKQLGVRVVDEDEFRAWLADNRIHDA
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaagtcggtcgccgaggaagttcagtcgctgcgccagcagattcgacatcac
gatcgactgtactacgtcgacgcgactccggaaatcagcgatctgcagtacgaccgcctg
ctgaagcgtttacagcaactggaacaggatcaccccgatctgcgtgatcccgattcgccc
acgatgcgggtcggcgatcaaccggtcgcacacctggaccaggtcgcccatcgcgtgccg
atgctgtcgatcgacaacacgtacagccgcgatgaattgcaagcctattttaaacgcaca
gaaaaatcgctggacggccaaccggtccggtgggtgatggaatacaaaatcgatggcgtc
gcggcgtcggtgcgatacgaagcgggacgcatggtgctggcgctgacccgtggcaacggc
gaagtcggcgatgacatcacgcacaacattcgaaccgttcgcgacctgcccctgatcctg
cacgacaacggatcagtaccggatgttttggagattcgcggcgaagtctacatgaccaac
gcggacttggccgatttgaatgtccgtcaagccgaacgcggcgagccgctttacaagaac
acacgcaacgtgactgcgggcacgatccgattgctggatcccgcgatcgccgcccaacga
aacctgcgtttctttgcacacggcatcggcgaagtgtcgggcatggacgccgacaaccac
atggaattcctaaaacgactcggagattttggcatcccgccgacacccgacgtgatggtg
ttcgaccattggtccgaagcaatgaaagcggtcgcggcgttggaagacgagatgcctgac
ttgcctttcgaagtcgacgggatcgtttttaaggtcgacgactttgccagccgcgaaaaa
cttggcattcgcagcaagagtccacgttggttggtcgcgtacaaatttgaacgctacgaa
gccaccacacgactgaaccagatcacggtccaagtcggcaagacgggaaccgtgacaccg
gtggctcatctggatccagtggagattgccgaaaccaccgtgtcccgcgcttcattgcac
aacgccgacgagatcgaacgactggatgtccgcgaaggcgacgtcgttgtggttgaaaaa
gccggcaagatcatccccaaggtcgtgcgtgtcgaaaaacaccttcgcactgatgacttg
aaaccctacgtctttccaaagcaatgtcccgagtgtgataccgagctggttcgggatgaa
ggcggtgtctacatccgatgccccaacccggcctgccccgctcaattacgccaaaagttg
atctacttcggcagccgcacgggtatggacatcgatggtttgggcgacgaactggtcgac
gttctgctggaccgtggtttggtcaaaacctatggcgacctttatcgtttgaccgccgat
caagtcgccgaattgaattggatccgattgcggaaaggacgcgacggaaaagagatcgaa
gtccaggtgggacagaagaatgcggacagcttgattcaggggatcgacgccagccgtgat
cgtggtttggcacgagtgctggcatcgctttcgatccgtcacgtcggtcccagtgtcgcg
cggatcatcacgggcaaataccacacgctggatctgctgcgcgacgcgtcccaagaagat
ttggccgacatccacgaaatcggtgaccggatcgccggcagtctgcacgaattcatccac
agtgatgtcggccgccaaacgctggatgacttggccgcggccggcgtcaagatgaccgat
cccgaaccggtgcccgatgatgacgagcaacggtggctgtcgggcaagaccctggtcgtc
acgggcacgctgaaacacttcaagcgtgacgaaatcaaaaaggcgattaccgaacttggc
ggacgggccagcggcagcgtcagcaagaacacggatttcctggtcgccggggaaaaggcc
ggcagcaagctagacaaggccaaacaattgggcgttcgggtcgtcgacgaagacgaattt
cgcgcatggttggccgacaatcgcatccatgacgcgtga
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integrated database retrieval system
