Comamonas squillarum: N4T19_04760
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Entry
N4T19_04760 CDS
T10846
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csqu Comamonas squillarum
Pathway
csqu03030
DNA replication
csqu03410
Base excision repair
csqu03420
Nucleotide excision repair
csqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N4T19_04760 (ligA)
03410 Base excision repair
N4T19_04760 (ligA)
03420 Nucleotide excision repair
N4T19_04760 (ligA)
03430 Mismatch repair
N4T19_04760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csqu03032
]
N4T19_04760 (ligA)
03400 DNA repair and recombination proteins [BR:
csqu03400
]
N4T19_04760 (ligA)
Enzymes [BR:
csqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N4T19_04760 (ligA)
DNA replication proteins [BR:
csqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N4T19_04760 (ligA)
DNA repair and recombination proteins [BR:
csqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N4T19_04760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N4T19_04760 (ligA)
MMR (mismatch excision repair)
DNA ligase
N4T19_04760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N4T19_04760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UXC19436
LinkDB
All DBs
Position
complement(1016121..1018214)
Genome browser
AA seq
697 aa
AA seq
DB search
MAENIDLFASPAGDAPQDAAAQVQALRAQLVQWAHEYYVQDAPTVPDGEYDRVYQQLEAL
EKAHPELLSPDSPTQRVIGAILEGLTPVRHAVPMLSIRTETDNEASGAQAFDARIRKELG
LDPSDPPVEYVAEPKFDGLAMNLRYEGGRLVQATTRGDGEVGEDVTHNIRTIRQIPLQLR
QDAAVPPVLEVRGEVYMRRDDFDALNRKQEAAGGKTFVNPRNAAAGAVRQLDSNITARRP
LSFFAYGLGEVTPVPQGGMQWDSHYAMLMQLRAWGFPVAPQVCVAQGAHALVAFHQRMGA
ERANLGYEIDGVVYKVNSRALQLELGFVSREPRWAVAHKYPAQEMVTRLEGIEVQVGRTG
KLTPVARLAPVFVGGVTVTNATLSNVFDIRKKGVRVGDDVIVRRAGDVIPEVAGRVPGLR
SQYVPNFSMPSQCPVCGSDVVREKGEANHRCTGGLFCVAQRKEAILHYAHRRAMDIEGLG
DKLVDQLVDSGVIRSLPDLYKLGIATLSGLERMAEKSAQNVLAALESSKKTTLARFVFGL
GIRHVGESTAKDLAKHFGVLDAIMDASVDELLQVNDVGPVVAHSLHTFFAQPHNREVVEQ
LRAAGVHWDEAVPAEKPAQILAGMTVVLTGTLPTMGRDEAKDLLEAAGAKVSGSVSKKTH
YLVAGADAGSKLTKAQELGVTVLDEAAMLRLLQNGAP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatattgatcttttcgcgtcgcccgctggtgacgccccacaggatgctgcc
gcccaggtgcaggccttgcgtgcgcagctggtgcagtgggcgcatgagtactatgtgcag
gacgcgcccacggtgcccgatggtgagtacgaccgcgtctaccagcagctcgaagcgctg
gaaaaagcccaccccgagctgctgagcccggactcgccgacccagcgcgtaatcggcgcg
attctggaaggcctgacccccgtgcgccatgccgtgccgatgctcagcatccgcaccgag
accgacaacgaagccagcggcgcgcaggcctttgatgcgcgcatccgcaaggagctgggc
cttgatcccagtgacccgccggtcgagtatgtggctgagcccaaattcgacggcctggcg
atgaacctgcgctacgagggcgggcgcctggtgcaggccacgacgcgcggcgacggcgaa
gtgggagaggatgttacccacaatatccgcaccatccgccagataccgctgcagctgcgc
caggatgccgccgtgccaccggtgctggaggtgcgcggcgaagtctatatgcgccgcgat
gattttgacgcgctcaaccgcaagcaagaagctgcgggcggcaagacctttgtcaacccg
cgcaatgcggcagccggcgcagtgcgccagcttgactccaacatcaccgcccggcgcccg
ctgtcgtttttcgcctatggcctgggtgaggtgacgccggtgccccaaggcggcatgcag
tgggacagccactacgcaatgctgatgcagctgcgcgcctggggctttccagtggcgccg
caggtctgcgtggcccagggtgcccatgcgctggtggcctttcaccagcgcatgggcgct
gagcgcgccaacctgggttacgagatcgatggcgtggtctacaaggtcaacagccgcgcg
ctgcagctggagctgggctttgtcagccgcgagccgcgctgggccgtggcccacaagtac
ccggcccaggagatggtgacgcggcttgaaggcatcgaggtgcaggtgggccgcaccggc
aagctgacgccggtagcgcgtctggcaccggtgtttgtcggtggcgtcactgtcaccaat
gccaccctgtccaatgtgttcgacatccgcaaaaagggggtacgggtgggggacgatgtc
atcgtgcgccgcgcgggcgacgtgatccccgaggtggcgggccgggtgcctggcctgcgc
tcgcagtatgtgcccaacttctcgatgcctagccaatgcccggtctgcggcagcgatgtg
gtgcgtgaaaaaggcgaggccaaccaccgctgcaccggcggcctgttctgcgtggcccag
cgcaaggaggccatcctgcactatgcgcaccgccgcgcgatggacatcgaaggtctgggt
gacaagctggtcgaccagctggtcgacagcggcgtgatccgcagcctgcccgacctctac
aaactgggcattgcgaccttgtcgggcctcgagcgcatggcagagaaatccgcacagaat
gtgctcgcggcgctggagtcctcgaagaaaaccacgctggctcgctttgtgtttggcctg
ggcattcgccatgtgggcgaatccaccgccaaggacctggccaagcactttggagtgctc
gacgcaatcatggatgcctcggtcgacgagctgctgcaggtgaacgacgtggggccggtg
gtggcccatagcctgcacaccttttttgcgcagccgcacaaccgcgaggtggtcgagcaa
ctgcgtgcagccggcgtgcactgggacgaagcggtgcctgccgaaaagcccgcgcagatt
ctggccggcatgaccgtggtgctgaccggcaccttgcccaccatgggccgcgatgaagcc
aaggacctgctggaagcggcaggcgccaaggtctccggctcggtgagcaagaagacccat
tacctggtggccggcgcggacgccggcagcaaactgaccaaggcccaggagctgggcgtg
acggtgctggacgaggcggcgatgctgcggctgctgcaaaacggcgcgccttga
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