Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c05420
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Entry
Cst_c05420 CDS
T02440
Symbol
ligA
Name
(GenBank) NAD-dependend DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
css03030
DNA replication
css03410
Base excision repair
css03420
Nucleotide excision repair
css03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
css00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cst_c05420 (ligA)
03410 Base excision repair
Cst_c05420 (ligA)
03420 Nucleotide excision repair
Cst_c05420 (ligA)
03430 Mismatch repair
Cst_c05420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
css03032
]
Cst_c05420 (ligA)
03400 DNA repair and recombination proteins [BR:
css03400
]
Cst_c05420 (ligA)
Enzymes [BR:
css01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cst_c05420 (ligA)
DNA replication proteins [BR:
css03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cst_c05420 (ligA)
DNA repair and recombination proteins [BR:
css03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cst_c05420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cst_c05420 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cst_c05420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cst_c05420 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
BRCT_2
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
Lar_restr_allev
Zn_ribbon_TFIIB
Flavoprotein
RUBY_RBDX
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AGC67564
UniProt:
L7VLP9
LinkDB
All DBs
Position
576391..578367
Genome browser
AA seq
658 aa
AA seq
DB search
MDEKVVRIKELVNRLNEASKAYYQENREIMSNYEYDKLYDELVELEKETGIVLSNSPTVK
VGYELLSSLPKEAHEQPMLSLDKTKDVNALVEWLGDKKGILSWKLDGLTIVLTYSNGELI
KAVTRGNGEVGEVVTNNAKVFRNLPIRISYKGNLVLRGEAVIRYSDFEKINREIENVDAK
YKNPRNLCSGSVRQLNNRITAERNVYFFAFQIVKVDEPEIGKFRSRQLNWLKSQGFDVVE
FKEVDSSNLEQTVKWFSEQVVKNDFPADGLVLAYDDVEYGRSLGTTAKFPRDSIAFKWQD
EVAETRLIKIEWSASRTGLINPIAIFEPVELEGTTVKRASVHNISVMESLELGIGDTIGV
YKANMIIPQIAYNLTKSGNIEIPEHCPVCGGQTQIRQENGVKFLYCTNGECPAKHIKSLV
HFVSRDAMGIDGLSEATIEKFVEKGFIKDYADIFRLERFRNEIVKMEGFGEKSYSNLISS
INKARKTNAVRLLYSMGIPGIGLSNAKRIAGYFNHEWGRIENATFEELINIDGIGDIMAR
DFVAFFKNERNRERIRELMAEIELEKETASDKSQIFRDITFVITGSVNHFKNRAELKKVI
EERGGRVTESVTSNTNYLINNDINSTSAKNKKAKELGIPIITEEQFLEWLNDGVIPGE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaaagtagtcagaattaaagaactggtaaacaggcttaatgaagcgtctaaa
gcatattaccaggaaaatcgggagataatgtccaattacgagtatgacaaactgtatgat
gaacttgtggaactggaaaaggaaacgggcatagtcctttcaaacagccctacggtgaaa
gtcggatatgagctgctcagcagtctgccgaaagaagcgcatgagcagcccatgctttct
ttggacaagacaaaagacgttaatgcgttggtggaatggctcggcgacaaaaagggaata
ctgtcgtggaaacttgacggtcttaccattgtgcttacatattccaacggtgagcttatt
aaagcggtaacccgcggcaacggtgaagtgggagaagtggttaccaacaatgcgaaggtg
tttaggaatttgcccatcagaatttcctataaaggaaatcttgtgctgagaggggaagct
gttatcagatattcggactttgaaaaaatcaacagggaaattgaaaatgtggacgcaaaa
tataagaatccgagaaatttatgcagcggctcggtcaggcagctcaataacagaataacc
gccgaaaggaatgtatatttttttgcctttcagattgtaaaggttgacgagccggaaata
ggaaaattcaggagcagacagttgaactggcttaaaagccagggctttgatgtggtggaa
tttaaggaagtggactcatcaaacctggaacagaccgttaaatggttctccgaacaggtt
gtaaaaaacgattttcctgccgacggtctggtgcttgcgtatgatgatgtggaatacggg
cgttcccttggcacaacggccaaattccctagagactccattgcttttaagtggcaggat
gaggtagccgaaaccaggctgataaaaattgaatggagcgcctcacggacagggctgatt
aatccaattgcgatttttgaaccggtggagcttgaggggacaacggtaaaacgagccagt
gtacataacatcagtgttatggaatcgctggaacttggaattggagatacgataggcgta
tacaaggcaaatatgataattcctcagatagcgtacaacttaacaaaaagcggaaatatt
gaaattccggaacactgtcctgtatgcggcgggcagacacaaatcaggcaggaaaacgga
gtaaagttcctatattgcaccaacggcgaatgcccggcaaaacatataaagtcgcttgtg
cattttgtcagcagggatgcgatgggaattgacgggctttccgaagccacgatagaaaaa
tttgttgaaaaaggatttattaaggattatgcggacattttcaggctggaaagattcaga
aacgaaatagtgaaaatggaaggattcggggagaagtcgtacagcaatttgataagttca
atcaacaaggcccggaaaaccaatgccgtccgtctcctttacagtatgggcatacccggt
atcggcctttccaatgccaaacgcattgcgggttatttcaatcatgagtggggccgtatt
gaaaacgcaacgtttgaggagttaatcaatattgatggaattggcgatattatggcccgg
gattttgttgccttttttaaaaacgaaagaaacagggaacgaatcagggagcttatggcc
gaaattgagctggagaaggaaacggcgtctgataaaagccagatattcagggatattacc
tttgttattacagggtcggtcaatcattttaagaaccgtgcggaattgaaaaaggtgata
gaagagaggggaggcagggtaaccgagtcggttacgtcaaacaccaattatcttataaat
aatgatataaattcaacttcagcaaaaaataaaaaagcaaaggaattggggattccgatt
ataaccgaggaacagttcctggaatggcttaatgatggagttattcccggcgaatag
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integrated database retrieval system
