Cydia strobilella (spruce-seed moth): 134756185
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Entry
134756185 CDS
T10503
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134756185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cstb03400
]
134756185
Enzymes [BR:
cstb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134756185
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134756185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
BRCT
Motif
Other DBs
NCBI-GeneID:
134756185
NCBI-ProteinID:
XP_063549082
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All DBs
Position
3:132579..165500
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AA seq
944 aa
AA seq
DB search
MSGPWPPAPEPEAEAVPAEDMPFAQLCDLLERLHKRKKEWSEQDNILTAFFDEFRLVAAR
ITGKKNCSLFPVMRLLLPALDRERGAYHLKETSLGSTLVRVLALPPTSADALRLTSYRSV
SNAQDSDLAGVAYFVLKNRFARQPGSLTVKDVNEVLDKIANAQVGGKARVLDEAFGTVFR
QLSADQLKWFLRIVLKDLRLRIGHARILAAMHPDAPEYYDSCSNLLKTCSELEPGSARPL
ELGVQVFFAVSPMLSERLDVTRVLRLPPAAYIVEEKFDGERFQIHIQDGVFEYFSRKGHS
YGQHFGTGDDNGLLTPKLRQGLAPGVRSVVLDGEMMGWHKQRQVFGTKGMSFDVKKITEN
SAFQPCFCAFDVLHYNGRGLAGAGGGGGAGAGGGGAPLRDRLAVLDSIITDVPGVLLRSK
RRTVTDRSEILEALNRAIEDQEEGIVVKDLDSHYLANRRNAGWYKVKPEYTEGTMVELDL
VVVGAEEASDKRRGRARSFHVACADSGVPGRPHRWVVVGRVASGLTFEQREGLCARLERH
WVSRRRAPPPACLVFNKEKPDFWLMPEHSIILQVRATELIRSTDFGTSHTLRFPRVTAVR
DDKPTTDAMPLAEFNALVKDRSVVKLSKRRVSAAALEAAAGTGAAPPAPPAPPALPGAAP
PAPPAPPGAAAAPEPRRKRTARVLEVPDHFRTTSIQDVEVVSAALKGREVCVVSGDEASS
KADLVRAVRSHGGRHVENVGPSTWCCVAGRKVFRAHSAQARDVDLASAAWLRSLPPSDTP
VELTPLDLLTACRTTKFNMCRRYDRFGDSYVDATDEDTLRRCFMKVDEEPEIHLTRTEML
QLDRVLFGDQHPFSFLRNCALHFPTPTTTTIVARMYGASVVEPHNASLTHVVLPRGSDKA
AVSRAERIGRGLVVSEDWLDACVEEREYVNEKPFLFNCIDLYVP
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtccctggccgccggcgcccgagcccgaggcggaagcggtccccgccgaggac
atgccgttcgcgcagctctgtgacttactcgagcgtctgcataagaggaagaaagaatgg
tcagagcaggataacatactgacggccttctttgacgagttcaggctggtggctgccagg
atcactgggaaaaagaactgcagcctgtttcccgtgatgcgccttctacttccagcgctg
gaccgcgagcgaggcgcctaccacctcaaagaaacctctttagggtccactctagtcaga
gtgctggctctgccgccgacttccgctgatgcgctccgcctgacgagctatcgctccgtc
agcaacgcacaggacagcgacctcgccggtgtggcttacttcgttctgaagaaccgtttc
gcgcgccagcccggctcgctcaccgtgaaagacgtcaacgaggtgctggacaagatcgcc
aacgcgcaggtcggggggaaggcgagagtactggacgaggcgttcggcacagtgttccgt
caactaagcgccgaccaactgaagtggttcctacgtatagtgctgaaggacctgcgcctt
cgcataggccacgccaggatcctcgccgccatgcaccccgacgcgccagagtactatgac
tcttgtagcaacctgcttaagacatgttcggagctggagccaggctcggcgcgcccccta
gagctcggcgtgcaagttttcttcgctgtcagccccatgttgtcagagcgcctcgacgtg
acgcgcgtgttgcggttaccacctgcagcttacattgtggaggaaaagttcgacggcgag
cgatttcagatccacatccaagacggcgtgttcgagtacttctcccgcaagggccactcg
tacggccaacacttcggcaccggagacgacaacggtctgctcactcctaaactacgccag
ggtctcgctccaggagtcaggagcgtggtgctggacggcgagatgatgggctggcacaag
cagcgccaggtcttcgggaccaaaggcatgtccttcgacgtgaagaagataactgagaac
tccgccttccaaccgtgcttctgcgccttcgacgtgctgcactacaacgggcgggggctc
gcgggcgcgggcgggggcgggggcgcgggcgcgggcgggggcggggcgccgctgcgggac
cggctggccgtgctcgactccatcatcacggatgtgccgggagtgttgctccgaagcaag
cgccgaacagtcactgaccgttcggagatcctggaggcgctcaacagagcgatcgaagac
caagaagaaggtatcgtggtgaaagacctggactcgcactacctggccaaccgccgcaat
gccggctggtataaggtcaaacccgagtacacggaaggcacgatggtggaactggatcta
gtggtggttggcgcagaggaagcgagcgacaagcgccgcggccgcgcgcgcagcttccac
gtcgcctgcgcggacagtggtgttccagggcgcccccaccgctgggtggtggtggggcgc
gtggcgagcggcctgacgttcgagcagcgcgaggggttgtgcgcgcggctggagcggcac
tgggtgtcgcggcgacgcgcgccgccgcccgcctgcctcgtcttcaacaaggagaagccc
gacttctggctcatgccagaacattcaatcattttacaagttcgcgccacagagttaatc
cgcagcacggacttcggcacgtcgcacacgttgcggttcccgcgcgtcacggccgtgcgc
gacgacaagcccacgacggacgccatgccgctcgccgagttcaacgcactggtcaaggac
aggtcggtggtgaagctcagcaagcggcgggtgtccgcggccgcgctggaggccgccgcg
ggcaccggcgccgcgccccccgcgccccccgcgccccccgcgctccccggcgccgcgccc
cccgcgccccccgcgccccccggcgccgccgccgcgcccgagccgcgccgcaagcgcacg
gcgcgcgtgctggaggttcccgaccacttccgcactacatctatacaggacgtcgaggtg
gtgtcggcggcgttgaaagggcgcgaggtgtgcgtggtgtcgggcgacgaggccagcagt
aaggccgacctcgtgcgcgcggtgcgctcgcatggcggccgacacgtcgagaacgtaggc
ccgtcgacatggtgctgcgtggcgggccggaaggtgttccgcgcgcactccgcgcaggcg
cgcgacgtcgacctcgcctccgccgcctggctccgctcgctgccgccctcagacaccccg
gtagaactgacgcccctagacttgctgaccgcctgtaggaccaccaagttcaacatgtgt
cgccgttatgaccgcttcggggatagttatgtggatgccaccgacgaggacacgctgcgg
cggtgcttcatgaaagtggacgaggagcccgagatccacctgacccgcactgagatgctg
caactcgaccgcgtcctcttcggcgaccagcaccccttctccttcctccgcaactgcgcc
ctccacttccccacccccaccaccaccacaatcgtcgccagaatgtacggagccagcgtc
gtagaaccgcacaacgctagtttaacgcatgtagttctgccgcggggttcagataaggca
gctgttagtcgggccgagaggattggaagagggctggtggtgtcggaggattggttggac
gcgtgtgtggaggagcgggagtatgtcaatgagaagccgtttttgttcaattgtatagat
ttgtatgtgccttaa
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