Conchiformibius steedae: H3L98_03195
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Entry
H3L98_03195 CDS
T06730
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cste
Conchiformibius steedae
Pathway
cste03030
DNA replication
cste03410
Base excision repair
cste03420
Nucleotide excision repair
cste03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H3L98_03195 (ligA)
03410 Base excision repair
H3L98_03195 (ligA)
03420 Nucleotide excision repair
H3L98_03195 (ligA)
03430 Mismatch repair
H3L98_03195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cste03032
]
H3L98_03195 (ligA)
03400 DNA repair and recombination proteins [BR:
cste03400
]
H3L98_03195 (ligA)
Enzymes [BR:
cste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H3L98_03195 (ligA)
DNA replication proteins [BR:
cste03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H3L98_03195 (ligA)
DNA repair and recombination proteins [BR:
cste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H3L98_03195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H3L98_03195 (ligA)
MMR (mismatch excision repair)
DNA ligase
H3L98_03195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H3L98_03195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DUF4796_N
5_3_exonuc
End3
Zn_Ribbon_TF
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QMT34033
LinkDB
All DBs
Position
complement(557171..559528)
Genome browser
AA seq
785 aa
AA seq
DB search
MTSTRERINKLRRQLYRYSYEYHTLNAPTISDDEYDRLFRQLQDLEKEFPQYHNSNKRKE
NFTDRVGNKPLDGFAEVRHAVPMLSLNNAFSPQDENGTFDHAEMYAFNERVCKDLGVRHT
VYTIEPKFDGLAVSLLYQQGILTLAATRGDGETGEDVSHNIRTIASIPLKLHGDTLPELL
EVRGEVLMLKSDFAALNARQEQNGQKTFANPRNAAAGSLRQLDSAIAAQRKLHFFAYGIA
RCQGATAPLTHADELHWLHSLGFAVAENEWKVCADIDEALAFYEQMAHARPHLPYEIDGM
VLKVNDLAQQEQLGFVSRAPRWAIAHKFPAEEALTQVEGIDVQVGRTGVLTPVARLKPVF
VGGVNVTNATLHNQDEVRRKDVRVGDTVMVRRAGDVIPEVVRVLPELRPMRSDDLFGEQQ
TPLHPPFELPAQCPVCGGETVRDEGMAALRCSAGLLCQAQRVQGLIHFASRKAMDIGGLG
QKQIEALAERGILRDFADIYALDVAALQSIKDPESQAVKWAQNILDGIAASKTPTLARFL
FALGIRHVGESTAKQLAAAFGTLERVAAAPEAVLACLPDIGDVVARSIARFFRTPEQNAL
AQRLLAAGVQPQPQTVTLDWHSTAAPARWLAKLPAAKLSEKRAQALWELAGSSIGGLLDD
PVLPAEWQQWRSHPEHAALLREIAAFLQNLPETTLNKDNAPVSAASASAVLGKTFVLTGT
LPSLSREQAQALIESAGGKTTSSVSKKTDFVVAGDKAGSKLDKAQQLGITILDEAALLAL
LPPKA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacccgcgaacgcataaacaagctcagacgacagctataccgttattcctat
gaataccacactttaaatgcacccaccatatccgatgatgaatatgaccgtttattccgc
caattacaggacttagaaaaagaatttccacagtaccataacagtaataagcgcaaagaa
aactttaccgaccgagtgggcaataaaccactagacggttttgccgaagtgcgccacgcc
gttcccatgctgtcgctgaacaatgccttctcgccacaagacgaaaacggcacatttgac
cacgccgaaatgtatgcgtttaacgagcgcgtgtgcaaagatttgggtgttcgccacact
gtttacaccattgaacccaaatttgacggcttggcagtcagcctgctgtaccagcaaggc
atcttaacgctggcagccacacgcggcgatggcgaaacgggcgaagacgtgagccacaat
atccgcaccattgccagcatacccttaaaactgcacggcgacaccttgcctgaattattg
gaagtgcgcggtgaagtattgatgctcaaaagcgattttgctgccttaaacgcacgtcag
gaacaaaacggacaaaaaacctttgccaacccgcgcaacgccgctgcaggcagtttgcgc
caattggattccgccattgccgcgcaacgcaaactgcatttttttgcctatggcattgcc
cgctgccaaggcgcaaccgcaccgcttacccacgcagatgaactgcattggctgcacagc
ttgggttttgctgtggcagaaaacgaatggaaagtctgcgccgacatagatgaagccttg
gcgttttatgagcaaatggcgcatgcacgcccgcatctgccttatgagattgacggcatg
gtgctgaaagtaaacgatttggcacaacaggaacaattgggttttgtttcccgcgccccg
cgttgggcgattgcacataaatttcctgccgaagaagcactgacacaggtggaaggcatt
gatgtgcaggtagggcgcacaggtgtactcacgcctgtggcgcgtttaaagcctgtgttt
gttggcggggtaaacgttaccaatgccactttgcacaatcaggacgaagtgcgccgtaaa
gacgtgcgcgtgggcgatacggttatggtgcgccgtgcgggggacgtgattcccgaagtg
gtgcgcgtgttgcccgaactgcgcccgatgcgctcggacgatttatttggcgaacagcaa
acgccgttgcatccgccgtttgaactgcctgcacaatgccccgtttgcggcggcgaaacc
gtgcgagatgaaggcatggcagctttgcgttgcagtgcaggattattgtgtcaggcgcag
cgcgttcaagggctgattcattttgcttcacgcaaagcgatggacattggcggcttggga
caaaaacagattgaagccttggcagaacgcggtattttgcgcgattttgccgatatttac
gcgctggacgtagccgctttgcagtccattaaagaccccgaaagccaagcagtgaaatgg
gcgcaaaatattttagacggcatcgctgccagcaaaacgccgacattggcacggttttta
ttcgctttgggcatccgtcatgtgggcgaaagcaccgccaaacagcttgccgccgctttc
ggtacgctggaacgggtagccgccgcgcccgaagccgtattggcgtgtttgcctgatatt
ggcgacgtggtggcgcgttccattgcgcggtttttccgcacccccgaacaaaacgctttg
gcacaaaggctgttggcagcaggcgtacagccacagccgcaaacggttacgctggattgg
cacagcaccgccgcgcctgcgcgttggttggcaaaactgcccgccgccaaactcagcgaa
aaacgcgcccaagcgctgtgggaactggcaggcagcagcatcggtggtttgttggacgac
cccgttttaccagccgaatggcaacaatggcgcagccaccccgaacacgccgccttattg
cgcgaaatcgctgcttttttacaaaacttgcccgaaaccacccttaacaaggataatgcg
cccgtatctgcagcgtccgcttccgccgtgcttggcaaaacctttgtgctgacaggcaca
ttacccagtttgagccgcgaacaagcacaagcactcatcgaaagcgcaggcggaaaaact
acttccagcgtttccaaaaaaaccgattttgtggtggcgggcgacaaagcaggcagcaag
ctggacaaagcacaacaattgggcattactatattagacgaagccgccttgctggcgctg
ctgcccccaaaagcataa
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