Colius striatus (speckled mousebird): 104549400
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Entry
104549400 CDS
T08355
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104549400 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csti03400
]
104549400 (LIG4)
Enzymes [BR:
csti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104549400 (LIG4)
DNA repair and recombination proteins [BR:
csti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104549400 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104549400
NCBI-ProteinID:
XP_010203948
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASAPASKPSEKTVASCVPFAHLCFTLERIQKCKSRPEKTKYLKEFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAGKLLNYRTPT
GSRGDAGDFAMIAYFVLKPRSPKQGRLMIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTVFSIFHPDAAELYNVTTDLEKVCRQLHDPSVSLS
DVSITLFSAFKPMLAAIADVQQVEKQMNDRTFYIETKLDGERMQMHKDGDIYKYFSRNGF
DYTQQFGASPLDGSLTPFIHTVFKSDIQNCILDGEMMAYNPEAQTFMQKGNRFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSRVFTPLTGRMHVVHKKSARTRKEVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPPC
NILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTS
DMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVLKVKKVIGIAEQFKAPDLSSVNKVS
NVFEDVEFCVMTGTGKYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLKE
VFSRMKGRMVMPLDMIAELEERYSWNSCQLSIFRGNTIYVDYYAALNEPGTEISGTTLSI
RALELRFYGAKVVPHLEEGVSHVVVGEDHSRVKEMKTLRRTFGKKFKIVSELWVTESVEE
GVLRNANEYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcaccagcttcaaagccttctgaaaaaacggtggcctcttgcgtgcctttt
gcacatctgtgttttaccctggagcgaatacagaagtgtaaatcccgtccagagaaaacc
aagtatctcaaggaatttctggattcctggagaaaattccatgatgctcttcatcagaaa
gagaaagatgtcaccgattctttctacccagctatgcgacttattcttccacagttggaa
agagaaaggatggcatatggcattaaagaaactatgcttgccaagctgtatatcgaactg
cttaatttaccaaaagatggaaaagatgccggaaagcttttaaattacaggacacctact
ggctcacgtggagatgctggagattttgcaatgatcgcctactttgtattaaagcccagg
agcccaaagcaaggcagactgatgatagaacaagtcaatgaacacttagatgccatagct
aataataacgctgctaaaaacaagggtctgttaaagaaaagtcttctgcagttaattacc
cagagcacagctctggaacaaaaatggctcatccggatgattataaaggacctaaagctt
ggtgttagtcaacagactgtattttccatttttcatcctgatgctgctgaattgtacaac
gtcacaactgatttggagaaagtttgcagacaactgcacgatccctctgtctcgcttagt
gatgtttctatcacgttgttctctgccttcaaaccgatgcttgctgccattgctgatgtc
cagcaggttgagaagcagatgaatgaccggacgttctacatagaaaccaagctggatggc
gaacgtatgcagatgcacaaggatggagacatctataagtatttctctcgaaatgggttt
gactatactcagcagtttggtgcttcccccctggacggttcgttaacgccgttcattcat
acagtgtttaagagcgacatacaaaactgcattctcgatggtgaaatgatggcttacaac
cctgaggcgcagacctttatgcaaaaaggaaacaggtttgacataaaaaggatggtggag
gactccgatctgcagacctgcttctgtgtgttcgatgtgctgatggttaatgatcagaag
ctggggcacgaagtgctaagcaagaggtacgagattttgagtcgcgtgttcaccccgtta
acgggcaggatgcatgttgtgcataaaaaaagtgccaggacaaggaaagaagtaattgac
gctttaaatgaagcgatagacaacagagaagaagggattatggtgaaggatcccatgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatacgtcaat
gggctgatggatgagctcgaccttctaattgtgggtggttactgggggaagggctcacgt
ggtggaatgatgtctcattttctgtgtgctattgcggagacgccccctccaaatgagaag
cctaccgttttccactccatttgtcgtgttggctctggctacactatgaaggaattgtat
gacttgggtttgaaactggctaaacactggaagccctaccataggaaggaccctccctgt
aacattttatgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcaggtcaaggcagctgagattgttaacagtgatatgtacaaaactgactgcactttg
agattccctcgaattgagaagataagagaggacaaagaatggtatgagtgcatgacttca
gacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcaccttcat
atagatgagtatgatgagccacaagagaaaaaaaggaaaactgtgttaaaggtgaagaag
gtaattggaatagctgagcaatttaaagctcctgatctttctagtgtgaacaaagtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaacgggaaaatactcaaagtct
gaactggaaagcagaattgcagaatgtggtggcagcgtggtgcagaacccggggcccgaa
acgtactgtgtgattgtaggagctgagaatgtcagagtgaaaaacatcattgcttccaac
aaatacgatgtggtaagagcagagtggctccttcagtgttttcaaaccaaaatgctggtg
ccttggcaaccggccttcatgattcacatgtctcctgacaccaaagaacattttgctcgt
gagtatgattgttatggagacagctatacagcagacacagatgttgcacaactcaaggaa
gtgttctcgagaatgaaaggcaggatggtgatgcctttggacatgattgcagaattagaa
gaacgttattcgtggaacagctgtcagctcagtatattcagaggaaacactatttatgta
gactattatgctgctcttaatgagcctggaactgaaatcagtggaacgacactatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtccctcaccttgaggagggtgtc
tcccacgttgttgtaggagaagatcattcccgagtaaaggaaatgaaaacattaaggaga
acatttgggaaaaaatttaaaattgtatcggagctgtgggtaacagagtcagtagaggaa
ggagtcctaaggaatgcaaatgagtacttaatttaa
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