KEGG   Capnocytophaga stomatis: CGC58_02215
Entry
CGC58_02215       CDS       T05529                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csto  Capnocytophaga stomatis
Pathway
csto03030  DNA replication
csto03410  Base excision repair
csto03420  Nucleotide excision repair
csto03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csto00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CGC58_02215
   03410 Base excision repair
    CGC58_02215
   03420 Nucleotide excision repair
    CGC58_02215
   03430 Mismatch repair
    CGC58_02215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csto03032]
    CGC58_02215
   03400 DNA repair and recombination proteins [BR:csto03400]
    CGC58_02215
Enzymes [BR:csto01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CGC58_02215
DNA replication proteins [BR:csto03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CGC58_02215
DNA repair and recombination proteins [BR:csto03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CGC58_02215
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CGC58_02215
   MMR (mismatch excision repair)
    DNA ligase
     CGC58_02215
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CGC58_02215
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH RNA_lig_T4_1 DNA_ligase_A_M RNA_ligase TF_Zn_Ribbon Auto_anti-p27 5_3_exonuc
Other DBs
NCBI-ProteinID: ATA90535
UniProt: A0A250G1B6
LinkDB
Position
487972..489966
AA seq 664 aa
MKTKIEQLRTELNQHNYNYYILDNPTISDYEFDLKLKELQDLERNHPEFYDENSPTVRVG
GTITKNFKTIVHEFRMYSLDNSYSKEDLEDWEKRVIKAIGTDKIAFACELKYDGASVSLH
YENGKLVQATTRGDGFQGDEITANVRTIRSVPLQLQGDYPEKFHIRGEIILPKKGFEQMN
KERVEAGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYSLIGNTGISTQYEGLQKARE
WGFKVPKESKLCHSTQEVMDFVNYWDEHRHDLPYEIDGVVVKVNNIQQQEELGYTSKSPR
WAIAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTIVKRASLHNADQIAKLD
VRVGDSVYVEKGGEIIPKIVGVNLEKRPENSNPTIYISNCPECGTDLIRNEGEAQHYCPN
TNTCPPQITGKIQHFISRKAMDIEGLGGETVELLFREGLIKNYADLYEITVPQLLPLERM
AEKSAENMVKGIEKSKEIPFERVLFALGIRYVGETVAKKLARHYKSIENLQKATLEELTE
VDEIGNRIAESVISFFNNTQNQLLIERLKHHGLQFSLSEENMQNQTDKLKGLTIVVSGVF
QIFSRDELKNLIEQNGGKVGSSISSKTSYIIVGDNMGPSKKEKAEKLGIPMISETDFQQM
IEVQ
NT seq 1995 nt   +upstreamnt  +downstreamnt
ataaaaacgaaaattgagcaactcagaacggaactcaatcaacataactacaactattat
attttagataatccaaccatttctgactatgaatttgacctgaaattaaaggaattacag
gatttagagagaaatcacccagagttttatgacgaaaattctccgacagttcgggtgggc
ggaacaattaccaaaaattttaaaaccattgtacacgagtttcggatgtattcgcttgat
aattcgtactctaaagaagatttggaagattgggaaaaacgagttatcaaagccatcgga
actgacaaaatcgctttcgcttgtgagttgaagtacgacggagcatcggtgagcttacat
tacgaaaacggaaaattagtgcaggcaaccacacgcggagatggttttcaaggtgatgaa
atcacggctaacgttcggactatcagaagtgtacctttgcaattgcaaggcgattatcct
gaaaagtttcatattcgtggagaaatcattttaccaaaaaaaggtttcgaacaaatgaac
aaagagcgtgtggaggctggggaagacccatatatgaaccctcgaaacaccgccagcgga
agccttaaattacaagatacggcagaagtagccaaacgcccactagattgtttgctttat
tccctaatcggaaataccggaatatcaacacaatacgaaggtttgcaaaaggcacgtgaa
tggggatttaaagttcctaaagaatccaaattatgccattctactcaagaggtaatggat
tttgtaaattattgggacgagcaccgtcacgatttaccctatgaaattgacggagtggta
gtaaaagtaaataacattcaacaacaagaagagttaggatatacctcaaaatcaccacgt
tgggcaattgcctacaaattcaaagccgaacaggtagatacaattttggaaagcatttcc
tatcaggtaggacgcacgggagctatcactccggttgctaatctcaaacctgttttactg
gcgggaaccatcgtaaaacgggcttcactacataatgcagaccaaatcgcaaagctggac
gttcgtgttggcgactcggtttatgtggaaaaaggaggtgaaattatcccaaaaattgtg
ggcgtaaaccttgaaaaacgccctgaaaactctaatccaactatctatatatcaaactgt
cctgaatgcggaacggatttaattcgcaatgaaggcgaagcacaacactactgccctaat
acaaatacttgtccgcctcagattacaggaaaaatacaacatttcatctcccgaaaagcg
atggatatcgaaggtttgggcggagaaacggtggaattgcttttccgagaaggacttata
aaaaattatgcggatttgtatgaaattaccgttccgcaattgttgcctttggaacgtatg
gctgaaaaaagtgcggaaaatatggtaaaaggcattgaaaaatcaaaagaaattccgttt
gaacgtgtactttttgcccttggaatacgctatgtgggagaaaccgtagcaaaaaaatta
gcacgccattataaaagtattgaaaacttgcaaaaagctactttggaggaacttacagaa
gtagatgaaattgggaatcgcattgcggaaagtgtaatttctttctttaataacacacaa
aatcaactacttatagaacgattaaaacatcacggattgcagttctctctttccgaggaa
aatatgcaaaatcaaacggataaacttaaaggattaaccatcgtagtttcaggagttttt
caaattttctcacgtgacgagttaaaaaatttaatcgaacaaaacggaggaaaagtaggt
tcatctatctcatctaaaacaagttacataattgtaggagataatatgggaccaagcaag
aaagaaaaagctgaaaaattaggtattccaatgattagtgaaaccgattttcagcaaatg
attgaagttcaataa

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