Capnocytophaga stomatis: CGC58_02215
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Entry
CGC58_02215 CDS
T05529
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csto
Capnocytophaga stomatis
Pathway
csto03030
DNA replication
csto03410
Base excision repair
csto03420
Nucleotide excision repair
csto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CGC58_02215
03410 Base excision repair
CGC58_02215
03420 Nucleotide excision repair
CGC58_02215
03430 Mismatch repair
CGC58_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csto03032
]
CGC58_02215
03400 DNA repair and recombination proteins [BR:
csto03400
]
CGC58_02215
Enzymes [BR:
csto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CGC58_02215
DNA replication proteins [BR:
csto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CGC58_02215
DNA repair and recombination proteins [BR:
csto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CGC58_02215
NER (nucleotide excision repair)
GGR (global genome repair) factors
CGC58_02215
MMR (mismatch excision repair)
DNA ligase
CGC58_02215
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CGC58_02215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_lig_T4_1
DNA_ligase_A_M
RNA_ligase
TF_Zn_Ribbon
Auto_anti-p27
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ATA90535
UniProt:
A0A250G1B6
LinkDB
All DBs
Position
487972..489966
Genome browser
AA seq
664 aa
AA seq
DB search
MKTKIEQLRTELNQHNYNYYILDNPTISDYEFDLKLKELQDLERNHPEFYDENSPTVRVG
GTITKNFKTIVHEFRMYSLDNSYSKEDLEDWEKRVIKAIGTDKIAFACELKYDGASVSLH
YENGKLVQATTRGDGFQGDEITANVRTIRSVPLQLQGDYPEKFHIRGEIILPKKGFEQMN
KERVEAGEDPYMNPRNTASGSLKLQDTAEVAKRPLDCLLYSLIGNTGISTQYEGLQKARE
WGFKVPKESKLCHSTQEVMDFVNYWDEHRHDLPYEIDGVVVKVNNIQQQEELGYTSKSPR
WAIAYKFKAEQVDTILESISYQVGRTGAITPVANLKPVLLAGTIVKRASLHNADQIAKLD
VRVGDSVYVEKGGEIIPKIVGVNLEKRPENSNPTIYISNCPECGTDLIRNEGEAQHYCPN
TNTCPPQITGKIQHFISRKAMDIEGLGGETVELLFREGLIKNYADLYEITVPQLLPLERM
AEKSAENMVKGIEKSKEIPFERVLFALGIRYVGETVAKKLARHYKSIENLQKATLEELTE
VDEIGNRIAESVISFFNNTQNQLLIERLKHHGLQFSLSEENMQNQTDKLKGLTIVVSGVF
QIFSRDELKNLIEQNGGKVGSSISSKTSYIIVGDNMGPSKKEKAEKLGIPMISETDFQQM
IEVQ
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
ataaaaacgaaaattgagcaactcagaacggaactcaatcaacataactacaactattat
attttagataatccaaccatttctgactatgaatttgacctgaaattaaaggaattacag
gatttagagagaaatcacccagagttttatgacgaaaattctccgacagttcgggtgggc
ggaacaattaccaaaaattttaaaaccattgtacacgagtttcggatgtattcgcttgat
aattcgtactctaaagaagatttggaagattgggaaaaacgagttatcaaagccatcgga
actgacaaaatcgctttcgcttgtgagttgaagtacgacggagcatcggtgagcttacat
tacgaaaacggaaaattagtgcaggcaaccacacgcggagatggttttcaaggtgatgaa
atcacggctaacgttcggactatcagaagtgtacctttgcaattgcaaggcgattatcct
gaaaagtttcatattcgtggagaaatcattttaccaaaaaaaggtttcgaacaaatgaac
aaagagcgtgtggaggctggggaagacccatatatgaaccctcgaaacaccgccagcgga
agccttaaattacaagatacggcagaagtagccaaacgcccactagattgtttgctttat
tccctaatcggaaataccggaatatcaacacaatacgaaggtttgcaaaaggcacgtgaa
tggggatttaaagttcctaaagaatccaaattatgccattctactcaagaggtaatggat
tttgtaaattattgggacgagcaccgtcacgatttaccctatgaaattgacggagtggta
gtaaaagtaaataacattcaacaacaagaagagttaggatatacctcaaaatcaccacgt
tgggcaattgcctacaaattcaaagccgaacaggtagatacaattttggaaagcatttcc
tatcaggtaggacgcacgggagctatcactccggttgctaatctcaaacctgttttactg
gcgggaaccatcgtaaaacgggcttcactacataatgcagaccaaatcgcaaagctggac
gttcgtgttggcgactcggtttatgtggaaaaaggaggtgaaattatcccaaaaattgtg
ggcgtaaaccttgaaaaacgccctgaaaactctaatccaactatctatatatcaaactgt
cctgaatgcggaacggatttaattcgcaatgaaggcgaagcacaacactactgccctaat
acaaatacttgtccgcctcagattacaggaaaaatacaacatttcatctcccgaaaagcg
atggatatcgaaggtttgggcggagaaacggtggaattgcttttccgagaaggacttata
aaaaattatgcggatttgtatgaaattaccgttccgcaattgttgcctttggaacgtatg
gctgaaaaaagtgcggaaaatatggtaaaaggcattgaaaaatcaaaagaaattccgttt
gaacgtgtactttttgcccttggaatacgctatgtgggagaaaccgtagcaaaaaaatta
gcacgccattataaaagtattgaaaacttgcaaaaagctactttggaggaacttacagaa
gtagatgaaattgggaatcgcattgcggaaagtgtaatttctttctttaataacacacaa
aatcaactacttatagaacgattaaaacatcacggattgcagttctctctttccgaggaa
aatatgcaaaatcaaacggataaacttaaaggattaaccatcgtagtttcaggagttttt
caaattttctcacgtgacgagttaaaaaatttaatcgaacaaaacggaggaaaagtaggt
tcatctatctcatctaaaacaagttacataattgtaggagataatatgggaccaagcaag
aaagaaaaagctgaaaaattaggtattccaatgattagtgaaaccgattttcagcaaatg
attgaagttcaataa
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