Litchfieldia suaedae: IM538_01555
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Entry
IM538_01555 CDS
T08143
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03030
DNA replication
csua03410
Base excision repair
csua03420
Nucleotide excision repair
csua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM538_01555 (ligA)
03410 Base excision repair
IM538_01555 (ligA)
03420 Nucleotide excision repair
IM538_01555 (ligA)
03430 Mismatch repair
IM538_01555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csua03032
]
IM538_01555 (ligA)
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_01555 (ligA)
Enzymes [BR:
csua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IM538_01555 (ligA)
DNA replication proteins [BR:
csua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IM538_01555 (ligA)
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IM538_01555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IM538_01555 (ligA)
MMR (mismatch excision repair)
DNA ligase
IM538_01555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IM538_01555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QOR66891
LinkDB
All DBs
Position
282819..284825
Genome browser
AA seq
668 aa
AA seq
DB search
MDKHTAQGRVQELQELLNRYNYEYHVMDTPSVSDAEYDALLRELVELESQFPEFKTVDSP
TQRVGGTILDAFDKVEHRTPMLSLGNAFSEQDLRDFDRRVKQVVGNDVSYVCEMKIDGLA
VSLRYQEGVFAQGATRGDGSIGEDITENLKTIRSIPLKLNKELSIEVRGEAFMPKKSFEA
LNEIRQANDEMLFANPRNAAAGSLRQLNPKLAAKRNLDIYVYSIADLGETGVTSHSEGLD
LLDKLGFKTNPERRKCGSIEEVIQFVDGWVEKRPKLAYDIDGIVIKVDSLEQQSQLGFTA
KSPRWATAYKFPAEEVVTKLIDIELSVGRTGVVTPTAILEPVKVAGTTVQRASLHNEDLI
REKDIKIGDFVVVKKAGDIIPEVVNVLVERRTGEEQTFNMPTECPECDSELVRLEEEVAL
RCINPMCPAQIREGLIHFVSRTAMNIEGLGEKVIAQLFQEKLITNVADIYKLRKEQLIQL
ERMGEKSADNLINAIQASKQNSLEKLLFGLGIRHVGAKAAKTLAQQFETMDRLLKITAEE
LIAINEIGEKMADSIVTYFSAPEVSELIEELRSLGVNLEYKGPKLVNADEIDSYFAGKTV
VLTGKLEILSRNDAKSEIEALGGKVTGSVSKSTDLVIAGEAAGSKLDKATELGIEVWDEE
RLIQELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacatactgcacaaggtcgcgttcaagaattacaagagttactaaatcgatat
aactatgaatatcatgtaatggatacgccttctgtttcggatgctgaatatgatgcctta
ttgcgtgaattagtagaacttgaaagtcaatttccagaatttaaaacagtagactctcct
acacaacgagtagggggtacaattttagatgcattcgataaagtcgaacatcgaacaccc
atgcttagtctaggaaatgcctttagtgagcaagacttgcgtgattttgaccggagagta
aaacaggttgttggaaatgatgtttcctatgtttgtgagatgaaaattgatggacttgct
gtttctcttcgatatcaggaaggggtctttgcacaaggagcaacacgcggtgatggaagt
attggtgaggacattaccgagaatcttaaaacaatccgatcgattccgttaaaactaaac
aaagaacttagtattgaggtacgtggcgaagcgtttatgccaaaaaaatcctttgaagca
ctaaacgaaataagacaagccaacgatgagatgctatttgcaaatccgcgaaatgctgct
gcaggatctttaagacaactaaatcctaagttagctgcaaaacgaaatctcgatatttat
gtttatagtattgcagacctaggtgaaactggagtcacttcccatagtgaaggtcttgat
cttcttgataagcttggttttaaaacaaaccctgaacgaagaaaatgtgggtcaattgaa
gaagttattcaatttgttgacggatgggtcgaaaaaagacctaaacttgcctatgacatt
gatggaatcgttataaaagttgattcattagagcaacaatcacagttaggttttaccgct
aaaagtcctaggtgggcaaccgcttataagttcccagcagaggaagtagtcactaagctt
atagatatagagttaagtgttggtagaacaggagtagtaacacctactgcaattttggag
cctgtaaaagtagcgggtacgacggttcaacgtgcttccctgcataatgaagaccttata
agagaaaaggacatcaagataggggattttgtcgttgtaaaaaaagcgggtgacattatt
cctgaagtagttaacgttcttgttgaacgacgtacaggtgaagaacaaacgtttaatatg
ccgacagagtgtcctgaatgcgatagcgaattagttcgtttagaagaggaagttgctctt
cgttgtatcaatccaatgtgtcctgctcaaattcgtgaggggttaatccattttgtatct
agaacagcaatgaacatcgaaggtcttggtgaaaaagttatcgctcaactattccaagag
aaattaattacaaatgtagctgatatttataaacttcgtaaagaacaacttatccaattg
gaacgcatgggtgaaaagtcagcagataacttaatcaatgcgatccaagcatcaaaacaa
aactcacttgagaaacttttatttggacttggaattcgtcacgttggtgctaaggcagct
aaaacattagcacagcaatttgaaacgatggatagattacttaaaataacagcagaagag
ctaattgcaataaatgaaattggtgaaaaaatggctgattccattgttacttatttttct
gctcccgaagtatctgagctcattgaagaacttcgatctctcggagtaaatcttgaatac
aaaggtccaaagctagtaaacgctgatgaaattgattcatacttcgctggcaaaaccgtc
gtattgaccgggaaattagagattttatctagaaatgatgcgaaatcagaaattgaggct
ttaggtggaaaagtaactggaagtgtaagtaaaagtactgatttagttattgctggtgag
gctgctggttcaaagctagacaaggctactgaattagggattgaagtgtgggatgaggag
cgtttgatacaagaattaaagaaataa
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