Corynebacterium suedekumii: QP029_09900
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Entry
QP029_09900 CDS
T09531
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csue
Corynebacterium suedekumii
Pathway
csue03030
DNA replication
csue03410
Base excision repair
csue03420
Nucleotide excision repair
csue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QP029_09900 (ligA)
03410 Base excision repair
QP029_09900 (ligA)
03420 Nucleotide excision repair
QP029_09900 (ligA)
03430 Mismatch repair
QP029_09900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csue03032
]
QP029_09900 (ligA)
03400 DNA repair and recombination proteins [BR:
csue03400
]
QP029_09900 (ligA)
Enzymes [BR:
csue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QP029_09900 (ligA)
DNA replication proteins [BR:
csue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QP029_09900 (ligA)
DNA repair and recombination proteins [BR:
csue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QP029_09900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QP029_09900 (ligA)
MMR (mismatch excision repair)
DNA ligase
QP029_09900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QP029_09900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WIM69555
LinkDB
All DBs
Position
1969490..1971547
Genome browser
AA seq
685 aa
AA seq
DB search
MTEQQQNPEVDTDLRRQWNDLAEQVRHHRDLYYNDQPDIPDADFDALFRQLQELEAEHPE
LAVPDSPTMEVGAPAVVSSTFANVEHLERMMSLDNVFDDEELAEWLARTPSQTYLTELKI
DGLSLALVYRDGVLERAATRGDGRVGEDVTANAKVIDDIPHELTGTEEFPVPALVEVRGE
VFIAVEDFAEVNELRQAEGGKPFANPRNAAAGSLRQKNPADVRKRRLRMVCHGIGAREGF
TPATQHEAYTALAAWGLPVSPYIEQVHSPEAVREKVAYWADHRHDAVFEMDGLVVKVDSY
AEQRALGSTSRAPRWAIAYKYPPEEVTTQLVDIQVGVGRTGRITPFAIMEPVFVAGSTVS
MATLHNQTEVQRKGVLIGDTVVIRKAGEIIPEVLGPVADKRDGSEREFIFPTLCPSCGTR
LAPQKEGDADWRCPNTRSCPAQLSARLTYLAGRGAFDIEALGEKGAQDLIRSGILVDESG
LFDLTAEDLLASKVYTTKAGTVNASGEKLLANLESAKQVDLWRVIVALSIRHVGPTAARA
LAARYRSLPALIDAPVDDIADTDGVGTIIAESFRAWFEVDWHRQIVDRWAAAGVTMADDS
EDLAEQTLEGLTVVVTGSLEGFTRDGAKEAILARGGKASGSVSKKTSYVVVGENAGSKET
KARDLGLPILDEAGFVRLLETGSPG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagcagcagcagaaccccgaggtcgacaccgatctccgccgccagtggaacgac
ctcgccgagcaggtccgccaccaccgcgacctgtactacaacgaccagccggacatcccg
gacgcggacttcgacgccctgttccggcaactgcaggaacttgaggccgagcaccccgaa
ctcgcggtgccggacagcccgacgatggaggtcggcgcccccgcggtggtcagctccacc
ttcgccaacgtcgagcacctcgaacgcatgatgagcctggacaacgtcttcgacgacgag
gagctcgccgagtggctggcgcgcaccccgagccagacctacctcaccgagctcaagatc
gacgggctctcgctggcgctggtctaccgcgacggcgttctcgagcgggccgccacgcgt
ggcgacggccgggtcggcgaggatgtgaccgccaacgcgaaggtcatcgacgacatcccg
cacgagctcaccggcaccgaggagttccccgtcccggcgctcgtggaggtccgcggcgag
gtgttcatcgccgtcgaggacttcgccgaggtcaacgagctgcgtcaggccgagggcggc
aagcccttcgccaacccccgcaacgccgccgccggttcgctgcggcagaagaatccggcg
gacgtgcgcaagcggcgcctgcgcatggtctgccacggcatcggcgcgcgggagggcttt
acgcccgccacccagcacgaggcctacacggcactcgctgcctggggcctgcccgtcagc
ccctacatcgagcaggtccattccccggaggcggtccgcgagaaggtcgcctactgggcc
gaccaccgccacgacgccgtcttcgagatggacggcctcgtggtcaaggtcgactcctac
gccgagcagcgcgccctgggatccaccagccgcgcaccgcgctgggccatcgcctacaag
tacccgccggaggaggtgaccacccagctcgtcgacatccaggtcggtgtcggccgcacc
ggccgcatcacccccttcgccatcatggagcccgtcttcgtcgccggctcgaccgtgtcc
atggccaccctgcacaaccagaccgaggtccagcgcaagggcgtgctcatcggggacacg
gtggtcatccgcaaggccggcgagatcatccccgaagtcctcggacccgtcgcggacaag
cgcgacggcagcgaacgcgaattcatcttccccacgctgtgcccctcctgcggcacgcgc
ctggcaccgcagaaggagggcgacgccgactggcgctgccccaacacccgcagctgcccc
gcccaactcagcgctcgcctgacctatctggccggtcgcggcgccttcgacatcgaggcc
ctcggcgaaaaaggcgcgcaggatctcatccgctccggcatcctcgtcgacgaatccggc
ctgttcgacctcaccgccgaggacctgctcgcctcgaaggtgtacaccaccaaggcgggc
acggtgaacgcctccggcgagaaactcctggccaacctcgaatccgcgaagcaggtggac
ctctggcgggtcatcgtcgccctctccatccgccacgtcggcccgaccgccgcccgcgca
ctcgccgcccgctaccgctccctgcccgcgcttatcgacgcccccgtggacgacatcgcc
gacaccgacggcgtcggcacgatcatcgccgaaagcttccgcgcctggttcgaggtggac
tggcaccgccagatcgtcgaccgctgggccgccgccggcgtcaccatggccgacgacagc
gaggacctcgccgagcagaccctcgagggcctgaccgtcgtggtcaccggctcgctcgag
ggcttcacccgcgacggagccaaggaggccatcctcgcccgcggcggcaaggcgtcgggc
tcggtgtccaagaagacctcctacgtcgtcgtcggcgagaacgccggctccaaggagacc
aaggcccgcgatctgggcctgcccatcctcgacgaggccggcttcgtccgcctcctggag
accggatcgccgggatag
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integrated database retrieval system
