Capricornis sumatraensis (Sumatran serow): 138089146
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Entry
138089146 CDS
T10522
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
138089146 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csum03400
]
138089146 (LIG4)
Enzymes [BR:
csum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138089146 (LIG4)
DNA repair and recombination proteins [BR:
csum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138089146 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138089146
NCBI-ProteinID:
XP_068840619
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All DBs
Position
12:complement(91716809..91720930)
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AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKAFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKEIMLAKLYVELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLSIQQVNDILDSIASNNSAKRKDLMKKSVLQLITQSSA
LEQKWLIRMIVKDLKLGFSQHTIFSVFHCDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYED
QFGASPQEGSLTPFIHNAFRTDVLNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSEL
QTCYCVFDVLMVNDKKLGHETLRKRFEILNSVFTPVPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGARGGMM
SHFLCAVAEKPASGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPSNILC
GTEKPEVYIEPCNSVIVQVKATEIVPSDMYKTGCTLRFPRIEKIREDKEWYECTSLEDLE
QLRGKACGKLASKHLYMSGDDEPQEKKRKAVPKMKKVIGIIEHLKAPNLSNVNRVSTVFE
DVEFCVMSGTSNHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSDNIRVKNIISSDKHDV
VKPEWLLECFRTRSCVPWQPRFMIHMCPSTKQHFAQEYDQYGDSYFVDTDLHQLKEVFSG
IKNAGEQTPGEMSPVIADLEHRYSWASMPLSMFRHHTIYLDLYAVINDLSTRIKGARLAI
TALELRFHGAQVVSYLAEGVSHVIVGEDQSRVADLKAIRRTLKRKFKILQERWVTVSIDK
CELQEENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacctcacagactgttgcatctcacgttccttttgcagatttatgt
tcgactttggaacgaatacagaaaagtaaagggcgtgcagaaaaaatcagacacttcaaa
gcatttttagattcttggagaaaatttcatgatgcccttcataagaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagggagagaatg
gcctatggaatcaaagaaattatgctggctaagctttatgttgaattgcttaacttgcct
cgagatggaaaagatgcccttaagcttttgaactacagaacaccgaccggaacccgtgga
gatgctggagactttgcaatgattgcgtactttgtattgaaacccagatgtctacagaaa
ggaagcctaagcattcagcaagtaaatgacattttagactccattgccagcaataattct
gccaaaaggaaagacctaatgaagaaaagtgttcttcagcttataactcagagttcagca
cttgaacaaaaatggctgatacggatgattgttaaggacctaaagcttggctttagtcag
cacactatattttctgtttttcactgtgatgctgctgagttgcataatgtcaccacagat
ctggagaaggtctgtaggcaactgcacgatccttcagtgggactcagtgacatttccatc
accctattctctgcctttaaacccatgctggccgctatagcagatattgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctcgacggcgagcggatgcag
atgcacaaggatggggatgtgtaccggtacttctctcgcaatgggtataactatgaggac
cagtttggtgcttccccacaggaagggtccctcacaccattcattcataatgcattcaga
acagatgtgctgaactgtatcctcgacggtgagatgatggcctacaaccctaacacacag
acttttatgcaaaaggggaataagtttgatattaaaaggatggtggaagattctgagctg
cagacttgttactgtgtttttgatgtattgatggttaatgataaaaagctaggacatgag
accctgagaaagaggtttgaaattcttaatagtgttttcacacctgtaccaggtagaata
gaaatagtgcagaaaacacaagctcatactaagaaagaagtaattgatgctttgaatgaa
gcgatagataaaagagaagaggggatcatggtaaaacacccgctgtccatttacaagcca
gataaaagaggggaaggatggttaaaaattaaaccagagtatgtcagcggactgatggat
gagctggacatcttaatcgtcgggggctactgggggaagggtgcccggggtgggatgatg
tctcattttttgtgtgctgtggcagagaagcccgcttctggtgaaaaaccctcagtgttt
cacactctctgtcgcgttggctcgggttacactatgaaagaactgtatgacctgggtttg
aagttggcaaaacactggaagccttttcataggaaagccccaccaagcaacattctatgt
ggaacagagaagccagaggtctacatcgagccttgcaattcagtcattgttcaggttaag
gccacagagatcgtccccagtgacatgtataaaactggctgcacgttgcgttttccacgg
attgagaaaataagagaagacaaagaatggtacgaatgtacatccctggaggacttagag
caacttcgagggaaggcctgtggaaagctcgcgtccaaacacctttacatgagtggcgat
gatgaaccacaagagaaaaagcggaaagctgtcccaaagatgaagaaagtcattggaatt
attgagcacctaaaagctcccaacctttctaacgtaaacagggtttctactgtctttgaa
gacgtggagttttgtgtcatgagtggaaccagcaaccatcccaagcctgacctggaaaac
agaatcgctgaattgggtggttacatagtacagaacccaggcccagacacgtactgtgtg
atcgcagggtctgacaacattcgagtgaagaatatcatctcttcagataaacatgatgtc
gtcaagccagagtggctgctagagtgttttaggaccagaagctgtgtgccctggcaaccc
cgcttcatgatccacatgtgcccgtcgacaaagcaacactttgcccaggaatacgaccaa
tacggggatagttactttgtcgacacagatttgcaccaactgaaggaagtgttttcggga
attaaaaacgctggtgagcagactcctggggagatgagtcctgtgattgctgatttggaa
cacaggtattcctgggccagcatgcctcttagcatgtttagacaccacaccatttatttg
gacttgtacgctgtcatcaatgacttaagtaccagaatcaagggagctaggttagccatc
acagccttggagcttcgatttcatggagcacaagtagtttcctatttagctgagggagtg
tctcacgtcattgttggggaagatcagagtcgggttgcagacttgaaagctattcgaagg
actcttaagaggaaatttaaaatcttacaagaacgttgggtcactgtttcaatagacaag
tgtgaattacaggaggaaaatcagtatttggtttga
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