Chromobacterium subtsugae: U6115_04795
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Entry
U6115_04795 CDS
T11179
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csut Chromobacterium subtsugae
Pathway
csut03030
DNA replication
csut03410
Base excision repair
csut03420
Nucleotide excision repair
csut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U6115_04795 (ligA)
03410 Base excision repair
U6115_04795 (ligA)
03420 Nucleotide excision repair
U6115_04795 (ligA)
03430 Mismatch repair
U6115_04795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csut03032
]
U6115_04795 (ligA)
03400 DNA repair and recombination proteins [BR:
csut03400
]
U6115_04795 (ligA)
Enzymes [BR:
csut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U6115_04795 (ligA)
DNA replication proteins [BR:
csut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U6115_04795 (ligA)
DNA repair and recombination proteins [BR:
csut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U6115_04795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U6115_04795 (ligA)
MMR (mismatch excision repair)
DNA ligase
U6115_04795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U6115_04795 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WSE92573
LinkDB
All DBs
Position
979662..982073
Genome browser
AA seq
803 aa
AA seq
DB search
MTANQLRAAELRELLNRYGREYYVLDAPTVPDAEYDRLFRELQALEEADPELALSDSPTR
RVGGAPLAEFDSVVHAVPMLSLANAFSDMQLADPAERHAELIQFDERVRKGLDAAEVEYA
TEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGANPPALLEVR
GEVLMLKRDFERLNADQIERGDKTFANPRNAAAGSLRQLDSRITAQRRLSFFAYAIAQVA
GADWPDTHAGEMAWLKQLGFPVVEESLRPVVKGVAGLSAYYEAVQARRAGLPFEIDGVVY
KVNRRDQQDALGFVSRAPRWAIAHKFPAEEALTVVEAIEEQVGRTGAITPVARLQPVFVG
GVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLERRPMQPAEGGDLFSAG
EAPQYPAYRLPSACPVCGSHVAREEGEAIARCSGGLSCRAQRSQAIQHFAGRRMMDIDGL
GERYIDKLVEYDYVKGVADLYRLKLEDLLEMKRRADEDEGVTPETVKAGKVASKWAENLI
AAIDASRAPPLARLLFALGIRHVGESTAKTLADWLGGMALIRRCPAALFAALPDIGAVVA
ESLADFFAEDNNEKALDALLAEVRPADEHAPSPRLRERLDDAALLARLGIPRLTEVRSQQ
LAAQRSLAWLAASERRALLELDLPAEVVNALADWLDEPGRRESLSRLAGLREAILAELPQ
AAEAAALPLDGKTLVLTGTLPTLSRDQAKALIEAAGGKVSGSVSKKTHYVVAGEEAGSKL
AKAQELGVAVVDEAGLQALLSGN
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaccaactgcgcgccgccgaattgcgcgagctgctgaaccgctacggccgc
gaatactacgtgctggacgcgccgaccgtgccggacgccgaatacgaccgcctgttccga
gaactgcaggcgctggaggaggccgatccggaactggcgctctccgattccccgacccgc
cgcgtcggcggcgcgccgctggcggaattcgacagcgtcgtgcacgcggtgccgatgctg
tcgctggccaacgccttttccgacatgcagctggccgacccggcagagcgccatgccgag
ctgatccagttcgacgagcgggtgcgcaagggcctggacgcggccgaggtcgagtacgcc
accgagcccaagttcgatggtctggccatttcgctgctgtatgaaaacggcgtgctgacg
cgcgccgccacccgcggcgacggcgtggccggcgagcaggtgaccgagaacgtgcgcacg
atacgcgccattcccttgaagctggacggcgcgaatccgccggcgctgctggaggtgcgc
ggcgaggtgctgatgctgaagcgcgacttcgagcgcctgaacgccgatcagatcgagcgc
ggcgacaagactttcgccaatccgcgcaacgccgccgccggcagcctgcgccagctcgat
tcgcgcatcaccgcgcagcgccggctgtcgttcttcgcctacgccatcgctcaggtggcg
ggcgcggactggccggacacccacgccggcgaaatggcctggctgaagcagctgggcttc
ccggtggtggaagaaagcttgcggccggtggtcaagggcgtggcggggctgtccgcttac
tacgaagcggtgcaggcgcgccgcgccggcctgccgttcgagatcgacggcgtggtgtac
aaggtgaatcgccgcgaccagcaggacgcgctgggcttcgtgtcgcgcgcgccgcgctgg
gccatcgcccataaattcccggccgaggaggcgctgacggtggtcgaggccatcgaggag
caggtgggccgcaccggcgccatcaccccggtggcgcggctgcagccggtcttcgtcggc
ggcgtcaccgtcaccaacgccacgctgcacaatgaggacgaagtgcggcgcaaggacgtg
cgcgtcggcgacacggtgatcgtgcgccgcgccggcgacgtgattcccgaggtggtgtcg
gtggtgctggagcgccggccgatgcagccggccgagggcggcgatctgttcagcgccggc
gaggcgccgcaatacccggcctaccgtttgccgagcgcctgcccggtgtgcggcagccac
gtggcgcgcgaagagggcgaggcgatcgcccgctgctccggcggcttgtcctgccgcgcc
cagcgcagccaggcgatccagcatttcgccggccggcgcatgatggacatcgacggcctg
ggcgagcgctatatcgacaagctggtcgaatacgattacgtgaaaggcgtggccgacctg
taccggctgaagctggaagacttgctggagatgaagcgccgcgccgacgaggacgagggc
gtcacgccggaaacggtgaaggccggcaaggtggccagcaagtgggcggaaaacctgatc
gcggcgatagacgccagccgcgcgccgccgctggcgcggctgctgttcgcgctgggcatc
cgccatgtcggcgaatccaccgccaagacgctggcggactggctgggcggcatggcgttg
atccgccgctgcccggcggcgctgttcgccgccttgcccgacatcggcgcggtggtggcg
gaatcgctggcggacttcttcgccgaagacaacaatgaaaaggcgctggacgcgctgctg
gccgaggtgcgcccggccgacgagcatgcgccgtcgcccagattgcgcgagcggctggac
gacgcggccttgctggcgcggctgggcattccgcgcttgaccgaagtgcgcagccagcaa
ctcgcggcgcagcgcagcctggcctggctggccgccagtgaacggcgcgcgctgctggag
ctggatctgccggccgaggtggtgaacgcgttggccgactggctggacgagccgggccgg
cgcgagtcgctgagccgtctggccggcttgcgcgaagccatcctggccgaactgccgcag
gccgccgaggcggcggcgctgccgctggacggcaagacgctggtgctgaccggcaccttg
ccgacgctgagccgcgaccaggccaaggccttgatcgaggcggccggcggcaaggtgtcg
ggcagcgtatcgaagaaaacgcattacgtggtggcgggagaggaggcgggcagcaagctc
gccaaggcgcaggaactgggcgtcgcggtagtggacgaagccggcctgcaggcgttgttg
tcgggcaactga
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