KEGG   Cucumis sativus (cucumber): 101214578
Entry
101214578         CDS       T02486                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101214578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csv03021]
    101214578
Enzymes [BR:csv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     101214578
Transcription machinery [BR:csv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     101214578
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 101214578
NCBI-ProteinID: XP_011650447
UniProt: A0A0A0L2L4
LinkDB
Position
3:complement(3030051..3046133)
AA seq 1483 aa
MSSVEDFRPGQKVMIHMEDEQDGELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVS
DPKLGLPNPSYQCTTCGASSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSV
RQELWGKVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSK
KYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPA
IDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDC
LKISKLSPEKLQNKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIE
LSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELN
MGDTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDC
LHGYVPQSLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQM
QQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISS
EGSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYS
HENMMDDIFCGLQEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAA
LNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVT
LSFSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVT
NRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTSESESE
NNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQT
FSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHF
HVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVC
LTVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGE
LYLRVTMSGEGNSRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSL
ESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGA
CMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQS
TCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKL
SFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCF
VLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWMQEKFE
NT seq 4452 nt   +upstreamnt  +downstreamnt
atgagttctgtcgaagactttcgaccaggccagaaggtgatgatccatatggaagatgaa
caggatggcgagctaccaattccatctggtctccttactggcataaactttagtgtgtca
aatcagcaagatatagagaatatagcggtaataacagttgatgcagccaacgaggtatcc
gatcctaagttgggacttccaaatccctcttatcagtgcaccacatgtggtgctagctct
ctaaaattttgtgaaggtcattttggggttatcaaattcccatatactataatccatcct
tattttctctcggaagttgcacaagtgttgaataaagtttgtcctgggtgtaaatctgtc
aggcaggaactatggggcaaggttgaggatccaacatctgattataatcgacctaagggt
tgcagatattgttttggaagtctaaaggattggtatccacctatgaggtttaagctttca
actactgatatgttcaaaaaaagtatgattatggtggaagtgaaagaaaatatgtcgaag
aaatatcaaaagagggtggctaaaggaggtttgccttcagattattgggattttatccct
aaagatgaacaacaggaagaaagttactgtagaccaaaccggaaaatcctaactcacgct
caggttcattatttgttgaaagacattgacccgaagtttcttaaaaagtttgtacctgca
atagattcactgtttctaaactctttccctgttacaccgaacagtcatcgtgtgactgaa
atggcacattcattttcaaatggacagcgtttgatctttgatgaaaggaccagggcttac
aagaaggtggttgattttagagggacagccaatgagttaggttctcgcgttctcgattgt
ctcaaaatttcaaagcttagcccagagaagttacagaataaggatttggtttaccagcaa
aagaaaattaaggatactgctactagctcatctggtttaagatggatcaaagatgttgtt
cttggaaagcggagtgaccactgtttccgcatggttgtcgttggtgatccaaacattgag
ttaagtgaaattggcataccttgtcatgttgcagagagattgcaaatatctgaacatctg
agttcttggaatatgaagaaattaagtacttcttgttaccttcatcttgttgaaaaggga
gagatctatgttcgtcgtgaaggtcgtttagttcgtgtacgtaatgttcttgaacttaac
atgggggacactatatataggcccctagctgatggggatattgtgctagttaatcgacca
ccatccatacatcaacactcacttattgctttatctgtcaagcttcttcctgtctctgca
gttctttccttaaacccactctgttgttctcctttccgtggagattttgatggtgactgc
cttcatggttatgttcctcaatctttggaagcccgagtggaggttagagagctggtttcc
ctagataaacagctaactaatggccaaagtggtagaaatctgctgtcacttagtcatgat
agtttaactgctgctcatttaattctggaagatggagtttcgttaaatcttttccagatg
cagcagttgcaaatgctcactttacatcagttgttgcctccagcaattgtaaaatcccct
ttgcttagaaattgtgcttggactgggaaacagttattcagcatcctcctacctcctgat
tttgattattcttctccttctcacaatgttttcattgagaagggagaattaatatcttca
gaaggatcttactggcttcgagacagtggtcgaaacctcttccaagcgctaatagaacac
tgtgagggcaagacccttgattacttgcgtgatgctcaaggggttctttgtgaatggtta
tcgacgagaggcttgagcgtttcattgtcagacttgtacctctctgtggattcatattct
cacgaaaacatgatggatgatatcttttgtgggttacaggaagctgaggaaacatgtaat
ttaaagcagctgatggtggattcacataaagagatcctcattggaaatgacgaagataat
caacatttgttatctattgcagtggagcgtttaatttatgagaagcagaaatctgctgct
ctaaatcaagcttctgttgatgctttcaagaaagttttccgggatatacaaaatctagtt
tacaagtattctggtaaagacaattcacttcttactatgttcaaggctggaagcaagggt
aatttgatgaaactagttcaacatagcatgtgccttggcttgcaacactctttggttact
ctatcctttagccttccacataagctctcgtgtgctgcatggaacagtcagaagatgcct
cgttatattcagaaggatggtcttcctgaccgcacacagtctttcataccctatgctgtg
gttgaaaattcctttctctcggggcttaatccgtttgagtgttttgctcattcggtgaca
aatcgagatagctctttcagtgacaatgctgaagttcctgggactttgacacgaaaactt
acgtttttaatgcgggatatatatactgcatatgatggaacagtgaggaatgcatatgga
aatcagctggttcagttttgttatgacattgatagacctactagtgaatcggaaagtgag
aataataatagagatcgtggtataggtggtcatcctgttgggtcattggctgcttgtgct
atctcagaagctgcatatagtgctttggaccaaccaattagtctacttgaagcttcgccg
ttgctaaatctaaagcgagtgctggagtgtggttcaaagaggaatagtaccaaacaaacc
ttttcattgttcttatcagagaaactttcaaaacgaagttatggatttgagtatggagct
ctaggagttaagaaccatttagaaagagtaatgtttaaagatattgtgtctagtgtcatg
ataatcttctccccactgccctcccggaagaagcattttagtccttgggtttgccacttt
catgtatgcaaggaaattttgaagaaaagaagattgaagatgaattctgttatccattcc
ctcaatatgcggtgcgactctatgagacaagaaggaagaatgaatttgccctctttgcaa
ataataacccaggattgtcctctagctgattcactgacagaagatggtgatacagtgtgc
ttaactgttacaatagctgaaaatacaaaaaactctttcctgcaattagatttcattcaa
gatttgctgattcatttccttcttggtacagttataagaggctttactgagattgacagg
gtagacatcacatggaatgaccgcccaaaggtcccaaaaccccgttgtagtcatggtgag
ctatacttgcgggtgaccatgtctggagaaggaaattcaagattttgggcaactctcatg
aataattgccttcctataatggatttgattgattggactcgtagtcatccagataacact
catagtctctgtttggcgtatggaatagattctggatggaagtactttctcaacagtttg
gagtctgcaacgttggatgttggtaaaacaatacgtcttgaacatttgctgcttgtttca
aattctctttcggctacaggagaatttgttggcttaaatgtgaaaggactgacacatcaa
agggaacatgctttggtcaaaacaccctttatgcaagcttgcttctcaagtcctggagct
tgtatgattaaagctgccaaggctggaatcaaggacaatctgtcaggaagtttagatgct
ttggcgtgggggagaatgccttcgctgggaacggggggacagtttgatatcctatattct
gggaaggggcacgaacttaataagcctgttgatgtttataatctactgggtggacaaagc
acttgtgagaagcagaacacgaagattgaatctcttgataagaacactatatctgagaaa
tatagtgctcagttaatgcttaaaaatggaggttctaccattaaaggacttaaaaggctg
gatagtgtttctaaatcaattttaaggaaatttttgacactgaacgatattcaaaagctg
tcgtttgcattgagaaccattttacacaagtattctctaaatgaaagattaaatgaagtg
gacaaatcaactttgatgatggctttatactttcatcctcatcgggatgaaaagattggt
gttggagcacaagacattaaggttggtagccactcaaagtatcaaaatacacgttgcttc
gtattgatacgatcggatggaacaacagaagatttttcataccacaagtgtgttttaggt
gctttggagatcattgctcctcatagagtaaagggttatcagtcaaaatggatgcaagaa
aagtttgagtga

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