Cucumis sativus (cucumber): 101215594
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Entry
101215594 CDS
T02486
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101215594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101215594
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101215594
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA
Arf
AAA_25
AAA_23
ORC-CDC6-like
AAA_30
TsaE
nSTAND3
AAA_7
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
101215594
NCBI-ProteinID:
XP_004139526
UniProt:
A0A0A0LTD5
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All DBs
Position
1:complement(11305312..11308080)
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AA seq
326 aa
AA seq
DB search
MPSSDPTIVIDRLRFTYPGIDGHPPSGSKPLIENFSLTLNAGDRCLLVGSNGAGKTTILK
ILGGKHMVEPHMVRVLGRSAFHDTALTVSGDLCYLGGEWRRDMAFAGFDVPIQMAVSAEK
LIFGVGGVDPKRRVELINILDIDLSWKMHKVSDGQRRRVQICMGLLKAYKVLLLDEITVD
LDVLARANLLKFLRRECEERGATIIYATHIFDGLEDWPSHMVYVSHGKLQISMPMDKIKE
ISKLSLMRTVESWLRKERDEERLRRRERKANGLPEFEERIEESRVTGDPAHSAVRVINNG
WAAGRLNSTVAGEENFLFSSNRVLRQ
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttccgatcccaccatcgtcatcgaccgcctccgattcacttaccctggaatc
gacggccaccctccttccggttccaaaccccttattgaaaatttctccctcaccctcaac
gctggtgatcgttgccttcttgtcggatccaatggcgctgggaagaccacgatcttgaag
attttgggagggaagcatatggtggagcctcatatggttcgtgtgcttggaaggtcggct
tttcatgatactgctttgactgtttctggtgatctttgttatctaggaggagagtggagg
agagacatggcctttgctggatttgacgttcccattcaaatggctgtatctgcagagaaa
ctaatttttggagtaggtggggttgatccgaaaaggagagttgaactcattaatatttta
gacattgatctatcatggaagatgcacaaggtatctgatggtcagagaagacgggtgcaa
atatgcatgggtcttctcaaggcatacaaggttcttcttcttgatgagataactgtggat
cttgatgtgctggcaagggctaacctcttgaaatttttgagaagggagtgtgaggaacga
ggggctacgataatttacgccacacatatatttgatggtcttgaagattggccatcacac
atggtctatgtgtcgcatgggaagttgcaaatttccatgccaatggataaaattaaagag
atcagcaaattatctcttatgagaacagttgagagttggctaaggaaggagcgggatgag
gagcgactgaggaggagggaaagaaaggcaaatggtctgcctgaatttgaagaaaggata
gaggaaagccgtgtgactggagatccagctcactctgctgttcgagtaataaacaacggt
tgggcagcaggacggcttaactccactgtcgctggagaagagaacttcctgttcagctct
aacagagttctcagacagtaa
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