Cucumis sativus (cucumber): 101218843
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Entry
101218843 CDS
T02486
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
101218843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101218843
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101218843
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
101218843
NCBI-ProteinID:
XP_011648772
LinkDB
All DBs
Position
2:complement(2311310..2321832)
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AA seq
963 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIADVVEEEPVGGPSGVLFPIDVSKPNPNGMEFDNLYLDMNGII
HPCFHPEGKPPPATYDAVFKSIFDYIDHLFSLVRPRKVLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEAEGQTLLPKEKPETCDSNVITPGTEFMGVLSVALQYYAQ
SRLNHNPGWRFTKVILSDSNVPGEGEHKIMQYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVIMLPGQQEKCYNCGKVGHLAAECRGKSDGPEDWNGADETPIHKKK
YQFLNIWVLREYLQYELDIPNPPFEINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHIYRKEFPAIGGYLTDAGEVLLDKVEHFIQAVAVHEDQIFQKRARIQQAQENNEEM
RGRARRENGPPPPPPTVDKIKLGEPGYKERYYAEKFNANPANIAEIKQDVVLKYVEGLCW
VCRYYYSGVCSWQWYYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTA
LPEKYRNLMTDPSSPILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSL
TDEEKNRNSVMLDMLYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNASGGMNGYLW
LCERNVIRNVVQSPINSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPKKVLSSLDIK
PFPTLWHEDNSSRRSHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGSSSGFFEQPY
SRNFPGPPMFSRPRQVGPSGFETGYGEDPNYNYGHYNNYQGASSRPRYSHSSNGMPGDRQ
SSRGNDRVQLHEQYNNLRTGMSALTIEENVRNRSPDVLTPGPPPAMLPKMLNVGNSTNQQ
NFTQATDTLPSPPHKWINRSPSANTMHARQESFPGGVNEKQVRQMYLAKTPVSQSGSGSG
SRQ
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagccttctaccggtggctcgctgaccggtacccgcgatccatcgccgat
gtggttgaggaagagccagtcggtggccctagtggtgtcctcttcccgatcgacgtctcc
aagcctaaccctaatggaatggagtttgataacttgtatttggatatgaatggcataatt
catccgtgctttcatcctgaaggcaagcctccacctgctacgtatgatgctgtatttaaa
tccattttcgattacattgaccatctcttctcattggttcggccaagaaaggttctttac
atggcaattgatggcgttgcacctagagctaaaatgaaccagcagcgttcccggcgattc
agagctgcaaaagatgctgctgaggccgaagctgaagaagaaagattaagaaaagagttt
gaagctgaggggcaaaccttattgcctaaggagaagcccgaaacatgtgattctaatgtt
atcactcctggaactgaatttatgggagtgctctcagtagcactacagtattatgcgcaa
tcaagattaaatcacaacccagggtggaggtttacaaaggttattctatctgattcaaat
gttcctggtgagggagaacacaaaattatgcaatacattcggctgcagcgcaatttacct
ggttttgatccaaacactcgacattgtctgtacggtctggatgcggatctgattatgctt
agtctagcaacacatgaggttcacttttcaatcttaagagaggtaataatgctaccaggg
caacaggaaaaatgttacaattgtggcaaagttggtcatttagcagctgagtgtcgtgga
aagtctgatggaccagaagattggaatggagcggatgaaactccgattcataagaagaaa
tatcagtttctcaacatttgggttttacgagaatacttgcaatatgaattggacattccc
aatccaccttttgaaatcaattttgagcggatagtggatgattttgtgtttttgtgtttt
tttgttggcaatgattttcttccacatatgccaaccttagagattagagagggtgctatt
aatttattgatgcacatatatagaaaggagtttcctgctattggtggatatcttactgac
gctggtgaggttttgttagataaagtggagcattttattcaagctgtggctgtacatgag
gaccaaatctttcaaaaaagagctcggattcagcaggcacaggagaataatgaagaaatg
agaggtagagctagaagagagaatggtcctccacccccacctccaacagttgacaagatc
aagttaggggagcctggatacaaggagcggtattatgctgagaagttcaatgccaaccca
gcaaacattgctgaaataaaacaagatgtggtcctgaagtatgtggagggtttatgttgg
gtctgtcgatattactattcaggggtttgctcttggcaatggtactatccttatcattat
tcgccttttgcctctgaccttaaaaacttggctgatttggagataacttttttcatcgga
gagccatttaagccttttgatcaactgatgggaactctaccagctgcaagttcaaccgct
cttcctgaaaaatacagaaacttgatgacagatccatcgtcacctatccttgaattttat
ccttcagactttgagattgacatgaatggaaagcgatttcagtggcagggtgttgccaaa
ttgcctttcattgacgagagaaaattgcttgctcaaactaggcgacttgaatggtcttta
acggatgaagagaagaatcggaatagtgtgatgcttgatatgctttatacacattgtacc
catccgttatctgcacagattttctcttattaccaagttgctagtcaactacctccacat
gcaagaacttgttgggtgattgacacgaatgcaagcggtgggatgaatggatatctttgg
ttgtgtgagagaaatgttatccgtaatgttgttcagtcaccgatcaacagtttgccagat
attcagtgcaatcaagtcctaaatgttacatatcttaatcctcagaagcacaaacatatc
cctgaacctccaaagggagcaatcattcccaaaaaggttctaagttccttggatatcaaa
ccgttccctacattatggcatgaagataatagttcccggcgctctcatggtagagatcgg
cctcgagtacctggagctattgctggccctctattgggagaagcagctcatcgtcttgtc
aaaaacactcttaatatcaaatctaatggctcatcatcaggattttttgaacaaccctat
tcacgcaatttcccaggaccacctatgttctctcgaccacgtcaagttggaccttcaggt
tttgagacggggtatggcgaagatccaaattataactatggccactataacaattaccaa
ggtgcatcaagtaggccaagatattcccactcttcaaatggtatgccaggtgaccggcaa
agttcccgtggaaatgatagagtgcagcttcatgaacaatacaacaacctgaggactgga
atgtctgctttgacaattgaagagaacgtaaggaatcgatctcccgacgttttaactcct
ggtcctcctcctgcgatgctgccaaagatgctgaacgtcggaaactcaacaaaccaacag
aattttactcaggctactgacacacttccttccccaccacacaaatggatcaatagatca
ccatctgcaaatacaatgcatgcaagacaagaaagttttccgggaggggtcaacgagaag
caagtgagacaaatgtatctagcaaagactccagtatcccagagcgggtcaggttctgga
agcaggcagtaa
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