Clostridium tagluense: LL095_18985
Help
Entry
LL095_18985 CDS
T08715
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctag
Clostridium tagluense
Pathway
ctag03030
DNA replication
ctag03410
Base excision repair
ctag03420
Nucleotide excision repair
ctag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LL095_18985 (ligA)
03410 Base excision repair
LL095_18985 (ligA)
03420 Nucleotide excision repair
LL095_18985 (ligA)
03430 Mismatch repair
LL095_18985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctag03032
]
LL095_18985 (ligA)
03400 DNA repair and recombination proteins [BR:
ctag03400
]
LL095_18985 (ligA)
Enzymes [BR:
ctag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LL095_18985 (ligA)
DNA replication proteins [BR:
ctag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LL095_18985 (ligA)
DNA repair and recombination proteins [BR:
ctag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LL095_18985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LL095_18985 (ligA)
MMR (mismatch excision repair)
DNA ligase
LL095_18985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LL095_18985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
RNA_ligase
BRCT_2
PTCB-BRCT
HHH
MTR4_beta-barrel
5_3_exonuc
Zn_ribbon_NUD
RUBY_RBDX
DUF7340
Motif
Other DBs
NCBI-ProteinID:
WAG49934
LinkDB
All DBs
Position
complement(4116052..4118046)
Genome browser
AA seq
664 aa
AA seq
DB search
MSGEDRINEIKKIIKYHSDRYYNEDNPEISDYEYDQLMLTLKAIEKEHPELITLDSPTQR
VGGNAKRKAGVLVKHNVPMLSLQDVFTKEEVYAYVNKKIEELEGPTFVVELKIDGLSMAL
RYVEGILTVAVTRGDGIIQGEDVTENAKAIKDVVRKLKDPIPYLEIRGEVYMASEAFDKV
NQQQELLDKKIFANPRNCAAGTLRQLDSKITKERELSLFIFNIQDIKGIEFRSHTEGYEW
LKKQGIKVIENYVKCKTADEVWNAIQVISEDRGNLAYDIDGVVIKIDNLEDRRKLGSTSK
VPKWAIAYKFPPEEKETKLIDIEVSVGRTGRITPTAIFEPIRLCGTSVSRAILHNQDFID
DLDIRIGDTIVVYKSGEIIPKIKSVVKEKRALELDRFKIPGICPVCGAPTVREKDTADIK
CTNPNCLAQLERHIINFVGRTAMDIKGFGTAYVKELIRFGYIKDIADVYSLFNYREELIE
QGIIGKEKNTDKLLEAIEKSKGNEAQKLMTGLGIPSIGKVAAKTIMNHYKSIENLQNASL
EDLQEVSDIGEISALNILRFFEDEKNCEIINRLKEYGVNMAVEDLKQVDNRFDGLTFVVT
GTLTTMGRNEATEVIEKHGGKVAGSVSSKTSYVLAGENAGSKRVKAEELGVTVISEEELV
NMLK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggaagatagaattaacgaaataaaaaagataattaaatatcacagtgataga
tattacaacgaagataatccggaaatatcagattatgaatacgatcaattaatgcttacg
cttaaagcaatagagaaagagcatccagaacttatcaccttagattcgccaactcaaaga
gtaggtggaaacgctaaaaggaaagctggggtactcgtaaaacataatgtcccaatgctt
agtttacaagacgtatttaccaaagaagaagtctatgcttatgtaaataaaaagattgaa
gaactagagggtccgacttttgttgttgagcttaaaattgatggtttgtcaatggcttta
cgttatgtagagggcattttaactgtagccgtgactcgcggtgatggaatcattcaaggt
gaagatgtaactgaaaatgctaaagcaattaaggacgttgtacggaagctaaaagaccct
attccatacctggaaattcgtggtgaagtatatatggcaagtgaagcctttgataaggtt
aatcagcaacaggagttattagataaaaaaatatttgccaatcctagaaactgtgctgca
ggcacattaagacagttggatagtaaaataacaaaggaaagagaattatctctatttatt
tttaatattcaagatatcaaaggaattgaatttaggtcccatacagaagggtatgagtgg
ctaaaaaagcagggcataaaagttattgagaattatgtgaaatgtaaaacagctgatgaa
gtgtggaatgctattcaggttatctctgaggatagagggaatttagcatatgacattgat
ggagttgttataaaaatcgataatttagaggatagaagaaaacttggaagtacttcaaaa
gttccgaaatgggctatagcctataaatttcctccagaagaaaaagaaacaaaattaata
gatattgaagtatcagtaggaagaaccggaagaattactcctacagcaatatttgagcca
attcgtttatgtggaacatctgtatctagagcaatccttcacaaccaagattttatagat
gatttagatataagaattggagatacgatagttgtatacaaatcaggagagattatccca
aagattaagtctgtagttaaagaaaaacgtgctctcgaattagatagatttaagattcct
ggcatttgtccggtatgtggggcaccaactgtccgggaaaaagatacggctgacatcaaa
tgtacaaatccaaattgtttggcgcaattagaaagacacattattaattttgttggtcgg
actgctatggatataaaaggttttggcacggcatatgttaaggaacttattcgttttgga
tatattaaagatattgctgatgtatattcactgtttaactatcgggaagagcttatagag
cagggtataattggaaaagaaaagaatacagataagttgctagaggctatagaaaaatca
aagggaaatgaggcacaaaaactaatgacgggcctgggaattcccagtattggaaaagta
gcagctaaaacaataatgaatcattataaatctattgaaaatttgcaaaatgcatctttg
gaagacctacaagaagtttctgatataggtgaaataagtgctttaaatatactaagattt
tttgaagatgaaaaaaactgtgaaataattaacaggttaaaagaatatggtgtaaatatg
gctgtagaagacttaaaacaggtggataatcgatttgatggattaaccttcgttgtaact
ggaacattgactactatggggagaaatgaagctacagaagtgatagagaagcacggggga
aaagtagcaggttctgtttcgagtaaaaccagttatgtgttagcaggagagaatgccgga
agtaagcgtgtaaaagcggaggaactcggagttacagttatatctgaagaggaattagta
aatatgttaaaatag
DBGET
integrated database retrieval system
