Chryseobacterium taihuense: NCTC12078_00856
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Entry
NCTC12078_00856 CDS
T07055
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctai
Chryseobacterium taihuense
Pathway
ctai03030
DNA replication
ctai03410
Base excision repair
ctai03420
Nucleotide excision repair
ctai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12078_00856 (ligA)
03410 Base excision repair
NCTC12078_00856 (ligA)
03420 Nucleotide excision repair
NCTC12078_00856 (ligA)
03430 Mismatch repair
NCTC12078_00856 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctai03032
]
NCTC12078_00856 (ligA)
03400 DNA repair and recombination proteins [BR:
ctai03400
]
NCTC12078_00856 (ligA)
Enzymes [BR:
ctai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12078_00856 (ligA)
DNA replication proteins [BR:
ctai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12078_00856 (ligA)
DNA repair and recombination proteins [BR:
ctai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12078_00856 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12078_00856 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC12078_00856 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12078_00856 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
RNA_lig_T4_1
zf-ribbon_3
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
VFB02875
UniProt:
A0A4U8WDB2
LinkDB
All DBs
Position
1:905947..907950
Genome browser
AA seq
667 aa
AA seq
DB search
MSENIQHTIEQLRKELHQHNENYYLLDEPSISDMEFDLLLKKLQDLEAQYPEFHDDDSPT
IRVGGGVTKIFPTVQHQFRMYSLDNSYDFDDLADWEKRIIKTIDDPVEFVAELKYDGASI
SILYENGKLTEAVTRGDGFQGDEITSNVRTISDIPLKLTGDFPERFFMRGEIYLTRKNFD
KINKLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRRLSSVLYQFVSTEVPAETHWELLH
KAQNWGFKTSDQAKLCKNLDEIKEFINFWDTERHNLPFEIDGIVLKVNSLKQQSQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTTVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNREKRKPDSKEVEYIKNCPECGTPLVKIEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLVENPADFYTLTKEQLLP
LERMAEKSAQNIIDGIEKSKEISFEKVLYGIGIKHVGETVAKKLVKNFPTIDDLKKATIE
ELCQVEDIGVKIAVSIVDFFNNTENILMLERLKSYGVQLEKGENKSEVLSDALEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIAK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacatactatagaacagctgagaaaggaacttcatcagcataat
gagaattattatcttttagatgaaccaagcatttcagatatggaatttgatctgcttctg
aaaaaactccaggatctggaagctcaatatcctgaatttcatgatgacgattcgccaaca
atacgtgtaggaggcggagttacaaaaattttcccaaccgttcagcatcagttcagaatg
tattctcttgataattcctatgattttgatgatttggcagattgggaaaaacgcatcatt
aaaaccattgacgatcctgtagaatttgtagcagaactgaagtatgacggagcttctatt
tcaattttatatgaaaacggaaagctcacagaggctgtaactagaggtgacggttttcag
ggtgatgagattacttccaacgttcgtactatttcagatattccgctgaaacttaccgga
gatttccctgaaagattttttatgcggggcgaaatttatttaacgagaaaaaatttcgac
aaaatcaataaacttcgtgaggaagaaggtctggatccttttatgaatcccagaaataca
gccagcggaagcctgaaaatgcaggacagcggtgaagtgagaaagcgaagactatcttcc
gttctgtatcagtttgtatctaccgaagttcccgcagaaacccattgggaattgctccat
aaagctcaaaactggggtttcaaaacttctgatcaggcaaaattgtgcaaaaatttggat
gagataaaagagttcatcaatttctgggataccgaaagacacaatctgccttttgaaatt
gatgggatcgtattaaaagtcaattctctgaagcaacagagccagcttggatatacagca
aaatctccacgatgggcaatggcgtataaatttaaagccgaaaaagtagaaacagaactg
caaagtgtttcctatcaggtcggaagaaccggagccatcacccctgttgccaatctaaag
ccagttttattggcaggaactactgtaaaaagagcttctctgcacaacgaggatatcatc
aaaaaactggatttgcatgagcatgattttgtgtatgttgaaaaaggcggtgaaatcatc
ccgaaaatagtgggtgtaaatagagaaaaacgaaaaccagacagtaaggaagttgaatac
atcaaaaactgcccggaatgtggaactccacttgtaaaaattgaagatcaggcgattcat
ttttgtccgaacgacctgcattgtccaccgcaggttgtgggaagaatgattcattatgtt
tccagaaaagctttaaatattgataatctgggaagcgaaacgatagaacaattgtataga
gaaaaactggtagaaaatccggctgatttttacacattaacaaaagagcagcttcttcct
ctcgaaagaatggcagaaaaatctgctcagaatatcattgacggcattgaaaaatccaaa
gaaatctcttttgaaaaagttttatacggaatcggcattaaacatgttggagaaacggtt
gccaaaaaactggtgaaaaattttccaactattgacgacttaaagaaagcaaccattgaa
gagctttgccaggtggaagatattggtgtaaaaatcgctgtaagcattgttgattttttt
aataatacagaaaatatcctgatgctcgaaagactaaaatcttacggagtacagttggaa
aaaggagaaaataagagtgaagttctgtcagatgctttagaagggaaaacttttctcttc
acaggcaaactctctcttttcaccagagaatctgccgaagaaatggtagaaaaacacggt
ggaaaaaatatttctgcagtttcaaaaaacctgaactatcttgtagtcggcgaaaaagcc
ggaagcaaacttaaaaaagcacaggatattgggacaattgagattttggatgaacagcag
tttctggatttgatagcgaaataa
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integrated database retrieval system
