Clostridium tetani E88: CTC_02394
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Entry
CTC_02394 CDS
T00112
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctc
Clostridium tetani E88
Pathway
ctc03030
DNA replication
ctc03410
Base excision repair
ctc03420
Nucleotide excision repair
ctc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTC_02394
03410 Base excision repair
CTC_02394
03420 Nucleotide excision repair
CTC_02394
03430 Mismatch repair
CTC_02394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctc03032
]
CTC_02394
03400 DNA repair and recombination proteins [BR:
ctc03400
]
CTC_02394
Enzymes [BR:
ctc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTC_02394
DNA replication proteins [BR:
ctc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTC_02394
DNA repair and recombination proteins [BR:
ctc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTC_02394
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTC_02394
MMR (mismatch excision repair)
DNA ligase
CTC_02394
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTC_02394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_pol_lambd_f
Nlig-Ia
BRCT_2
5_3_exonuc
HHH_3
DNA_ligase_ZBD
UPF0758_N
Zn_ribbon_PF0610
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AAO36865
UniProt:
Q891I0
LinkDB
All DBs
Position
complement(2531475..2533481)
Genome browser
AA seq
668 aa
AA seq
DB search
MDISEEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKETGFVLSYSP
TQRVGDTVLTQFDKYTHKSRLWSLDKAQNIEQLKEWINRNEKIIMEYNRLNEETLPMPTY
ILTKKFDGLTVNCTYDESGILVKGATRGTGIIGEDITSQVKTIKCLPLRIANNNLIEVRG
EAIMTKEAFDKYNEKAEIPLKNLRNGAAGALRNLDVRETAKRNLSAFFYDIGYSEGNEFK
TYMEMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNYDIDGIVIAINHIKTR
EVLGYTVKFPRWAIAYKFEAEEATTKLIDVEWNVGRSGRVTPTALLESVELGGATIKRAT
LNNMDDIIRKKVRLGAEVFIRRSNDVIPEIMGVVESSLENTEEIKAPLKCPYCESKLINE
GVHLFCENTLSCKPQLVKSLVHFASREAMNIEGFSEKTAEQFYEELNIKSIGDLYRVKKE
DLLTLDKFKEKKADNIMNAIENSKKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKN
ATIEELTSVKDIGEIVANSVIEFFKQENINESIKELLELGVTPIMDITEIKKDNKFNGKT
IVVTGTLEGYTRNEIKEKLEALGAKVSGSVSKKTDFVLAGEEAGSKYNKAMELGIRIITE
EEFNEMIN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacatttctgaagaaaagaaaagaaggatacatgagttaattgaagaattaaacaaa
tatgcttatgaatattatgttttagataatccaactgtttcagataaggagtatgataaa
agatatgatgaattagttaacttagaaaaagagacaggattcgtattatcttattctccc
acacaaagagttggagatactgtattaacacagtttgataaatatactcacaaaagtagg
ttatggagtttagataaagcccaaaatattgaacagttaaaagaatggattaatagaaat
gaaaaaataataatggaatataaccgtttgaatgaagaaactttacctatgcctacatat
attttaactaagaaatttgatggattaactgtaaattgtacctatgatgaaagtggaatt
ttagtaaaaggtgctacaagaggtactgggattataggagaggatataacatctcaagta
aaaactataaaatgtctacctttaaggatagctaataataatctcatagaagttcgtgga
gaagctataatgacaaaggaagcttttgataaatataatgaaaaggcagagattccactt
aaaaatttaagaaatggtgcagcgggagcacttagaaatctagatgtaagggaaacagct
aagagaaatttatcagcttttttctatgatatagggtacagtgaaggaaatgagtttaaa
acttatatggagatgataggctttttaatcagtatggggtttccagtagatccatatata
aaagaatgtaaggatattgtagaaattaaagatgaaattaaatatattgaagatataagg
aatgaattaaactatgatattgatggaattgtaattgcaataaaccatattaaaacaaga
gaagttttaggatatactgtaaagtttccaagatgggctatagcttataaatttgaagca
gaagaagctactacgaaattaatagatgtagaatggaatgtaggaagaagtggtagagta
acacctacagctcttttggaatctgtagaattaggaggagctactattaaaagggctacc
ttgaacaatatggatgatataattagaaagaaagttagattaggagcagaagtttttata
aggcgttctaacgatgtaatacctgaaataatgggagttgtggaaagttctttagagaat
actgaagaaataaaggcacctttaaaatgtccttattgtgaaagtaagcttataaatgaa
ggtgttcatctgttttgtgaaaataccctatcttgtaaaccacagctagtaaaaagccta
gtacattttgctagtagagaggctatgaatatagaaggatttagtgaaaaaactgcagaa
caattttatgaagaattgaatataaaatccataggagacttatatagagtaaaaaaggaa
gatttattaactttagataaattcaaagagaaaaaagcagataatataatgaatgccata
gagaatagtaaaaaacctaaattatcatcctttatatatgcattaagtatacctaatgta
ggggttaaaactgctagggatttagtaaagtcttttaagactttagataatataaaaaat
gctactattgaggaactaacttccgtaaaggatatcggcgaaatagttgcaaatagtgtt
atagaattctttaaacaggagaacataaacgaaagtataaaagagcttttagaattaggg
gttacgcctataatggatattacagaaattaaaaaggataataaattcaatggaaagact
atagttgtaacaggaacattagaaggatatacaagaaatgaaataaaagaaaaattagag
gctttaggagctaaagttagtggtagtgtaagtaaaaaaactgactttgtattagcagga
gaagaagctggttctaagtataataaggctatggaattaggtattagaataataacagaa
gaggaatttaacgagatgataaactaa
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