Chlorobaculum tepidum: CT0457
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Entry
CT0457 CDS
T00088
Symbol
lig
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03030
DNA replication
cte03410
Base excision repair
cte03420
Nucleotide excision repair
cte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CT0457 (lig)
03410 Base excision repair
CT0457 (lig)
03420 Nucleotide excision repair
CT0457 (lig)
03430 Mismatch repair
CT0457 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cte03032
]
CT0457 (lig)
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT0457 (lig)
Enzymes [BR:
cte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CT0457 (lig)
DNA replication proteins [BR:
cte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CT0457 (lig)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CT0457 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CT0457 (lig)
MMR (mismatch excision repair)
DNA ligase
CT0457 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CT0457 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
PknG_rubred
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AAM71700
UniProt:
Q8KF74
LinkDB
All DBs
Position
477055..479079
Genome browser
AA seq
674 aa
AA seq
DB search
MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELVTPDSP
SQRVGGGITKEFPTVVHRDPMLSLSNTYSIAEVADFCNRVEKLVAAEGGGTPEYVAELKY
DGVAISLLYRDGLLVCGSTRGDGRQGDEITANLRTIPSIPLRLEMPDLPLFGTALSGEIE
VRGEVYMRKDDFERLNEERPEEERFANPRNATAGTLKLQDSAEVARRRMSFVAYYLKGYD
GEAPTHLKRLEQLKSMGFMTGAAAKLCKGMDEIADFIAEWSEKRWTLPYETDGVVLKLNE
VSLWERLGATAKSPRWAIAYKYPAQQAKTVLQGVVFQVGRLGTITPVAELKPTRLAGSIV
SRSTLHNFDEIKRLGVRIGDHVMIEKSGEVIPKVVSVVLDERPAETAEIEVPSECPVCGT
RLERPEGEVNWYCPNEEGCPAQKRGRILHFASRNALDIQNLGESLVTQLVDRGLVSDAGD
LYSLTQEQLAGLDRMAAKSAQNVLDALEKSKKQSYARLLFALGIRHVGAATARELAHACP
SIDRLREMDEEALAAVPDIGPVIAASIRDFFAKPWVQAMLQKLAEAGLPMQAGEEKALVN
NNFEGQSVIFTGALERHVRQEAEEMVRERGGRIVSSVSKKTTLVVAGKEAGSKLEKAIKL
GVKVIDEDEFERML
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggataaagcgaaagcacaacaggaaatcggcaagcttcgcgcggagatcgaacgccac
aatcgcctctactacctcgaagccaaaccggagatttcggatttcgagttcgacaagctg
cttaaacggttgattatgctcgaaaaggagttcccggagctggtgacgcccgacagcccg
tcgcagcgtgttggcggcggcatcaccaaggagtttccgacggttgtgcaccgcgacccg
atgctcagtctttcgaacacctactccatcgcggaggtggccgacttctgcaatcgcgtc
gaaaagctggtggcagccgagggcggcggtacgccggagtacgtcgccgagctgaagtat
gacggtgtggcgatcagcttgctctaccgcgacggtctgctcgtttgcggctccacgcgt
ggcgacggtcggcaaggcgacgagatcacggccaatctccggacaatcccgtcgattccg
cttcggctcgaaatgcccgatctgccgcttttcggcacagcattgagcggcgaaatcgag
gtgcgcggcgaggtctatatgcgcaaggacgatttcgagcggctcaacgaggagcgcccg
gaggaggagcgtttcgccaacccgcgcaacgccaccgccggcacgctcaagttgcaggac
tcggcggaggtcgcgcggcgccggatgtcgttcgtggcctactatctcaaggggtacgac
ggcgaagcgcccacgcacctgaagcggctggagcagctcaaaagcatgggcttcatgacc
ggcgcggcggctaagctttgcaaagggatggacgagattgccgacttcatcgccgagtgg
tcggagaagcgctggacgctgccgtacgaaaccgacggcgtggtgctcaagctcaacgag
gtcagcctgtgggagcggctcggcgcgaccgccaaaagtccgcgctgggcgattgcctac
aagtacccggcgcagcaggccaagaccgtgctgcaaggcgtggtgttccaggtcgggcgg
ctcggcaccatcacgccggtggccgaactcaagccgaccaggctcgctggatcgatcgtg
tcgcgctcgaccctgcacaacttcgacgaaatcaaacggcttggcgtgcgcattggcgac
cacgttatgatcgaaaagtcgggcgaagtaattccgaaagtggtcagcgtcgtgctcgac
gaacgcccggcggaaaccgccgaaatcgaagtgccgtcggagtgcccggtttgcggcacc
aggctggagcggcccgaaggcgaggtgaactggtattgccccaacgaggagggatgcccc
gcgcagaagcgaggccgcattctgcacttcgcctcgcgcaacgccctcgacatccagaac
ctcggcgagtcgcttgttacgcagctcgtcgatcgtggcctcgtgagcgacgcgggcgac
ctttacagtcttactcaggagcagctcgcgggcctcgaccgcatggctgccaaatcggcg
caaaacgtgctcgacgcgctcgaaaagagcaaaaagcagagctacgcccgcctgctcttc
gccctcggcatccgccacgtcggcgcagccacggcccgcgaactggcccacgcctgcccc
tccatcgaccgcctccgcgagatggatgaagaggcgctcgccgccgtgcccgacatcggc
cccgtcatcgccgcaagcatccgcgacttcttcgccaaaccgtgggtgcaagcgatgctc
caaaagctcgccgaagccgggctgccgatgcaggcgggagaggaaaaggcgctcgttaac
aacaattttgaaggacaaagcgtcatcttcaccggcgcactggaacgccacgtccgccag
gaggccgaagagatggtacgcgaacgcggcggcagaatcgtcagctcggtgagcaaaaag
acaacactcgttgtcgcaggcaaagaggccggaagcaagcttgaaaaggcgataaagctg
ggagtgaaggtgattgacgaggatgagttcgagcggatgctgtga
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