Corynebacterium testudinoris: CTEST_05510
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Entry
CTEST_05510 CDS
T03956
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cted
Corynebacterium testudinoris
Pathway
cted03030
DNA replication
cted03410
Base excision repair
cted03420
Nucleotide excision repair
cted03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cted00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTEST_05510 (ligA)
03410 Base excision repair
CTEST_05510 (ligA)
03420 Nucleotide excision repair
CTEST_05510 (ligA)
03430 Mismatch repair
CTEST_05510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cted03032
]
CTEST_05510 (ligA)
03400 DNA repair and recombination proteins [BR:
cted03400
]
CTEST_05510 (ligA)
Enzymes [BR:
cted01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTEST_05510 (ligA)
DNA replication proteins [BR:
cted03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTEST_05510 (ligA)
DNA repair and recombination proteins [BR:
cted03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTEST_05510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTEST_05510 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTEST_05510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTEST_05510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AKK08548
UniProt:
A0A0G3H9H8
LinkDB
All DBs
Position
1121695..1123734
Genome browser
AA seq
679 aa
AA seq
DB search
MTEQNSDLRRQWNELAEEVRHHRDLYYNDQPSIPDADFDRLFAQLQQLEADHPELAVPDS
PTMEVGAVVSSTFANVEHLERMMSLDNVFDDEELTEWLTRTPSETYLAELKIDGLSLALV
YRNGRLERAATRGDGRIGEDVTANARVIEDIPHSLTPHPDFPIPALIEVRGEVFIAVEDF
SQVNELRQAEGGKPFANPRNAAAGSLRQKNPEDVKKRRLRMVAHGIGAREGFAPATQHEA
YLALAAWGLPVSPYTEQVHTPEQVREKVAYWADHRHDAIFEMDGLVVKVDSIAEQRALGS
TSRAPRWAIAYKYPPEEVTTVLLDIQVGVGRTGRVTPFAIMEPVFVAGSTVSMATLHNQT
EVVRKGVLIGDTVVIRKAGEIIPEVLGPVVEKRDGTEREFIFPTLCPSCGTRLAPQKEGD
ADWRCPNTRSCPAQLSARLTYLAGRGAFDIEALGEKGAQDLIRTGILEDEAGLFDLTSTD
LESSKVYTTNAGKVNASGRKLLANLESAKKADLWRVIVALSIRHVGPSAARALASRFRSL
KVLFDAEVTDIADTDGVGTIIAESLAAWYDVDWHRQIVDSWAHAGVTMEDESTDLAVQTL
DGLTVVVTGSLENFTRDGAKEAIISRGGKASGSVSKKTDFVVVGENAGSKETKARDLGLT
ILDEAGFIQLLEEGPPSAM
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagcagaactccgacctccgccgacagtggaacgaactggccgaagaagtacgc
caccaccgcgacctgtactacaacgatcagccctcgatccccgacgcagacttcgaccgg
ctatttgcccagctgcagcagcttgaggcggaccaccccgagctcgccgtgccggatagc
ccgacgatggaggtcggcgcggtcgtctcctcgaccttcgccaacgtcgagcacctcgag
cgcatgatgagcctggataacgtcttcgacgacgaagaactcaccgaatggctaacgcgt
acgcccagcgagacctacctcgccgagctgaaaatcgacggcctatcgttggcgctggtc
tatcggaacggccgcctggagcgggccgcgacgcgtggagatggccgaatcggcgaggat
gtcaccgccaatgcccgggtgattgaggacatcccgcattctttgaccccgcatccggat
tttcccatccccgcactcatcgaggtccgcggcgaggtgttcatcgcggtcgaggacttc
tcccaggtcaacgaacttcgccaggccgaaggcggcaagccctttgccaatccacgcaat
gccgccgccggatctttgcgccagaaaaacccggaggatgtgaaaaagcgccgcctgcgc
atggttgcccacggcatcggtgctcgcgaggggtttgcaccggcgacccagcacgaggcc
tatttggcgctggctgcctgggggttgcccgtcagtccctacaccgagcaggtccatacc
ccggagcaggtgcgcgagaaggtggcctactgggccgatcaccgccatgacgcgatcttt
gaaatggacggtctggtggtcaaggttgattccatcgccgaacagcgcgctcttggttcc
accagccgggccccgcggtgggcgatcgcctacaaatacccgccggaggaagtaacgacg
gttcttctcgacattcaggttggggtgggccgcacgggtcgcgtcactccattcgcgatc
atggagcccgtgtttgtcgccggctcgaccgtgtccatggcgacgttgcacaatcagact
gaggtcgtccgcaagggcgtgctcatcggcgatacggtggtcatccgcaaggcaggcgag
atcatcccggaggtgctcggcccggtcgtggagaagcgggacggcaccgagcgcgagttc
attttccccacgttgtgcccctcctgcggcacccgtctcgctccgcagaaagagggcgac
gccgattggcgctgccccaacacgcgttcctgccccgcgcaattgtctgcccgcctgacc
tacctggcggggcgcggagccttcgatattgaagcgctgggggagaagggtgcccaggat
ctcattcgtactggcatcttggaggacgaggcgggcttgttcgacctcacctcgacggat
ctggagtcctcgaaggtgtacacgaccaatgccggcaaggtgaacgcctccggccggaag
ctgctggccaacctggaatcggcgaagaaggctgacctgtggcgcgtcattgttgccctg
tcgatccgccatgtcgggccctcggcagctcgcgccttggcctcgcgtttccgctcgttg
aaggtgcttttcgacgctgaggtcaccgacatcgccgacaccgacggcgtcggcacgatc
attgctgagagcctcgccgcctggtacgacgtcgactggcaccgccagatcgtcgattct
tgggcgcacgccggggtgaccatggaggatgagagtaccgacctcgctgtgcagaccttg
gacggtctgacggttgtggtcacgggatccctggagaacttcacccgggatggcgccaag
gaggcgatcatttcccgcggaggtaaggcctcaggctcagtatcgaaaaagactgacttt
gtggtggtcggggagaacgctggctccaaggaaaccaaggcccgcgacctagggttgacg
atcctcgacgaggccggatttatccagctgttggaagaaggccctccctcggccatgtga
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integrated database retrieval system
