Corynebacterium terpenotabidum: A606_07290
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Entry
A606_07290 CDS
T02714
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cter
Corynebacterium terpenotabidum
Pathway
cter03030
DNA replication
cter03410
Base excision repair
cter03420
Nucleotide excision repair
cter03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A606_07290 (ligA)
03410 Base excision repair
A606_07290 (ligA)
03420 Nucleotide excision repair
A606_07290 (ligA)
03430 Mismatch repair
A606_07290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cter03032
]
A606_07290 (ligA)
03400 DNA repair and recombination proteins [BR:
cter03400
]
A606_07290 (ligA)
Enzymes [BR:
cter01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A606_07290 (ligA)
DNA replication proteins [BR:
cter03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A606_07290 (ligA)
DNA repair and recombination proteins [BR:
cter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A606_07290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A606_07290 (ligA)
MMR (mismatch excision repair)
DNA ligase
A606_07290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A606_07290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Auto_anti-p27
GH-E
Motif
Other DBs
NCBI-ProteinID:
AGP31105
UniProt:
S4XHE7
LinkDB
All DBs
Position
1706084..1708174
Genome browser
AA seq
696 aa
AA seq
DB search
MSENQPNPSPAGTASANGTIDPAERWATLAAEIRHHRDLYYYRDPVITDAEFDQLLRDLQ
ELEAEHPEVVTGPSPTTEVAQPPMNSPFRNIAHRERMLSLDNVFDGSELKEWLDRTPSAT
YLTELKIDGASIDLLYLDGRLDTALTRGDGVTGEDITHNARTISDIPDRLTGTEEFPVPA
VIEIRGEIFITVEDFATMNADRQAEGKKMFANPRNAAAGAMRQKNPAETAKRPLRLICHG
IGAHEGFDPTSLHDAYRAIEAWGLPVSPYTTQVHSADEVIARVGYWGEHRHAAAHEMDGL
VIKVDSLAEQLDLGETSRAPRWAIAYKYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTY
VAGSTVSMATLHNPTEAHRKGIRLGDRAMIRKAGEVIPEVLGPVEEARDGSEREFVFSSV
CPECGTPLSPTKEGDADWRCPNTRYCPGQLQNRLTYLAGRGAFDIDALGERAAHDLIISG
VLPDEGALFSLTPEILATTSAYTTKAGKLNRPGEVLLENLEESKQVDLWRVITALSIRHV
GPTAAKALAASLQSIPAIDEASVEEMAEIDGVGGIIAQSVKDWFAVDWHREIVDAWADAG
VRMEQFVEVSDLPEQTLAGVTVVVTGSLENYDRLSAKEAVESRGGKAAGSVSKKTDFLVA
GEKAGSKLTRAEELGVPVLDEAGFGRLLAGGPDAVR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaatcagccgaacccgtcccccgccggtaccgcctccgccaacgggaccatc
gaccccgccgagcgctgggcgaccctggccgcggagattcgccaccaccgggacctctat
tactaccgtgatccggtgatcacggacgccgagttcgaccagctgctgcgcgaccttcag
gaactggaggccgaacaccccgaggtcgtcaccggccccagcccgaccaccgaggtcgcc
cagccgccgatgaactccccgttccgtaatatcgcgcaccgggagcgcatgctcagcctc
gacaatgtcttcgacggctccgagctgaaggaatggctggaccgtactccctctgccacc
tatctcaccgagctgaagatcgacggggcatccatcgacctgctctacctcgacgggcgg
ctggataccgccctgacccgcggcgacggcgtcaccggggaggacatcacccacaatgcc
cgcaccatctccgacatccccgaccggctcaccggtaccgaggagttccctgttccggcc
gtcatcgagatccggggcgagatcttcatcaccgtggaggatttcgcgacgatgaacgcc
gaccggcaggcggaggggaagaaaatgtttgccaacccccgcaatgccgcggccggggcg
atgcgccagaagaatccggcggagacagcgaagcgtccgctgcggttgatctgccacggc
atcggcgcccacgaaggtttcgaccccaccagtctgcatgacgcctaccgcgcgatcgag
gcctggggtctgccggtgagcccgtacaccactcaggtccactcggccgatgaggtcatc
gcccgggtcgggtactggggagagcaccgccacgccgccgcgcatgagatggacggcctg
gtcatcaaggtcgattctctcgccgagcagctcgatctcggggagaccagccgcgcgccc
cggtgggcgatcgcctacaagtacccaccggaggaggcgatgaccacggtggagtccatc
cgcatcgggatggggcgcaccggtcgtgcgacccccttcgccgtcatgtccccgacctat
gtcgccggctcgacggtctccatggccaccctccacaatccgacggaggcgcaccgcaag
ggcatccggctcggggatcgggcgatgatccgcaaggccggcgaggtgatccccgaggtc
ctcggcccggtcgaggaggctcgcgacggctccgagcgggagttcgtcttctcctcggtg
tgcccggaatgcggtactcccctgtccccgacgaaggagggggacgctgactggcgctgc
cccaacacccggtactgccccggtcagctgcagaaccggctgacctacctggcaggacgt
ggcgccttcgacattgacgccctcggtgagcgtgccgcccatgacctcattatctccggc
gtcctccccgatgagggggcactgttctccctgacaccggagatcctcgccacgaccagc
gcgtacaccacgaaggcaggaaagctgaaccgtcccggcgaagtgctgctggagaatctg
gaggagtcgaagcaggtcgacctgtggcgggtgatcaccgccctgtcgatccggcacgtc
gggccgaccgcggcgaaggcgctggcggcgtccctgcagtccattccggcgatcgacgag
gcctccgtcgaggagatggcagagatcgacggtgtcggtgggatcatcgcacagtcggtg
aaggactggtttgccgtcgactggcaccgtgagatcgtggacgcctgggcggacgccgga
gtgcgcatggagcagttcgtcgaggtctcggacctaccggagcagacactggccggcgtg
accgtggtggtcaccggctcgctggagaattatgaccggttgagcgccaaagaggcggtg
gagtcccgcggtggcaaggccgccggttccgtgtcgaagaagacggacttcctcgtcgcc
ggggagaaggcgggctcgaagctcacccgggctgaggaactcggggtcccggtactggac
gaggcaggtttcggacggctcctcgcgggtggaccggacgcggtgcggtga
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